Table 2.
Searching Promoters for Genes with Known Complete Coding Region
| Programs | Training set of 133 promoters | Test set of 120 promoters | ||||
| true prediction (sensitivity) | false prediction (FP/AllP) | undetected | true prediction (sensitivity) | false prediction (FP/AllP) | undetected | |
| PROSCAN1.7 | 31 (23%) | 21 (40%) | 81 | 26 (22%) | 28 (52%) | 66 |
| NNPP2.0 | 63 (47%) | 50 (44%) | 21 | 24 (20%) | 63 (72%) | 33 |
| PromFD1.0 | 53 (40%) | 44 (45%) | 48 | 60 (50%) | 63 (51%) | 10 |
| promoter2.0 | 9 (7%) | 101 (92%) | 23 | 10 (8%) | 92 (90%) | 18 |
| TSSG | 78 (57%) | 13 (14%) | 42 | 56 (47%) | 27 (33%) | 37 |
| TSSW | 58 (44%) | 36 (38%) | 39 | 56 (47%) | 38 (40%) | 26 |
| CONPRO | 86 (65%) | 9 (9%) | 38 | 75 (63%) | 10 (12%) | 35 |
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The CONPRO can detect promoters for about half of the human genes with mRNA known. For the promoters predicted, about 88% of them are true promoters. Additional information is given in the legend of Table 1.
