Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats

Table 2.

Measure Genetic Variation of Microsatellite Loci among Populations of Four Species of Felids

Species Population N No. loci amplified Tot.no.alleles % P (SE) Av. he (SE) Av. ho (SE) Av. no.alleles per locus (SE) Av.microsat.variance (MV) Av.range repeats Max.range bp
Lion
P. I. persica GIR 10 88 111 19.3 (4.2) 7.9 (0.09) 7.6 (0.09) 1.26 (2.8) 0.21 2.4 10
P. I. leo NGC 10 88 252 83.0 (4.0) 40.4 (0.46) 42.5 (0.48) 2.86 (5.3) 3.26 4.8 36
P. I. leo SER 10 88 305 84.1 (3.9) 47.4 (0.54) 47.3 (0.54) 3.47 (5.3) 4.45 5.8 38
P. I. leo ETO 10 77 202 71.0 (5.2) 37.3 (0.48) 37.8 (0.49) 2.62 (5.5) 3.98 5.0 38
P. I. leo KAL 10 77 229 80.5 (4.5) 43.4 (0.56) 41.4 (0.54) 2.97 (5.6) 3.92 4.7 36
P. I. leo KRU 10 77 258 79.2 (4.6) 44.4 (0.57) 47.2 (0.61) 3.35 (5.7) 3.99 5.3 38
P. leo All 60 89 456 86.5 (3.6) 54.3 (0.58) 37.3 (0.42) 5.12 (5.1) 5.34 7.3 46
Puma
P. c. coryi BCS 10 84 127 42.9 (5.4) 14.7 (0.17) 16.1 (0.19) 1.51 (4.0) 0.82 2.7 26
P. c. hippolestes IDO 10 84 211 75.0 (4.7) 34.8 (0.41) 32.9 (0.39) 2.51 (5.1) 2.75 4.0 26
P. c. subsp. SA 10 84 503 91.0 (3.1) 68.3 (0.81) 58.2 (0.69) 5.99 (5.4) 7.99 8.7 38
P. concolor All 30 84 558 92.9 (2.8) 56.2 (0.67) 35.7 (0.42) 6.64 (0.42) 5.58 9.2 38
Cheetah
A. j. raineyi EA 10 82 291 84.1 (4.0) 46.7 (0.57) 43.3 (0.53) 3.55 (5.5) 2.38 4.5 22
A. j. jubatus CNM 10 82 275 79.2 (4.5) 47.7 (0.58) 45.7 (0.56) 3.35 (5.5) 2.18 4.4 28
A. j. jubatus WNM 10 82 276 81.7 (4.3) 46.2 (0.56) 43.8 (0.53) 3.37 (5.5) 1.93 4.2 20
A. jubatus All 30 82 382 85.4 (3.9) 52.3 (0.64) 44.3 (0.54) 4.66 (5.5) 2.33 5.3 28
Domestic Cat
F. catus DOM 10 93 498 98.9 (1.1) 68.1 (0.73) 62.8 (0.67) 5.41 (5.0) 6.4 7.4 42
  • Population/species abbreviations: GIR, Gir Forest lions; NGC, Ngorongoro Crater lions; SER, Serengeti Park lions; ETO, Etosha Park lions; KAL, Kalahari-Gemsbok Park lions; KRU, Kruger Park lions; BCS, Big Cypress Swamp pumas; IDO, Idaho pumas; SA, South American pumas; EA, East African cheetahs; CNM, captive Namibian cheetahs; WNM, wild Namibian cheetahs; Ajr, Acinonyx jubatus raineyi; Ajj, A. j. jubutus; DOM, domestic cats.

  • Other Abbreivations: N, individuals sampled; %P, percent polymorphic loci; Av. he, average Expected heterozygosity; Av. ho, Average observed heterozygosity; Av. variance, average variance of repeat number; Av. range, average range in repeats, of polymorphic loci only, in the sample; Max. range, greatest range of allele sizes of a locus, in bases. Standard errors (SE) are reported in parentheses.

This Article

  1. Genome Res. 12: 414-423

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