Exploration of Novel Motifs Derived from Mouse cDNA Sequences

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Figure 2.
Figure 2.

Multiple sequence alignments of the MDS00105 motif region. The proteins are designated by the species abbreviation and the name. The positions of motif MDS00105 are indicated by “+”. Submotif positions based on regular expressions are designated by “#&”. Multiple sequence alignments of representative complete sequences are shown in Supplement Figure 1A,B,C. (A) Alignment ING1 and ING1L MDS00105.1 motif region. The SWISS-PROT/TrEMBL accessions of the sequences are as follows: (HSA)P47ING1, Q9UIJ4; (HSA)P33ING1A, O43658; (MMU)Ing1 [isoform 1], Q9QXV3 isoform 1; (HSA)P47ING1A, Q9UK53; (HSA)P24ING1B, Q9UBC6; (HSA)ING1C, Q9P0U6; (HSA)P33ING1B [fragment]; CAC38067; (HSA)P33ING1, O00532; (HSA)P24ING1C, Q9NS8; (HSA)P33ING1, Q9UIJ2; (HSA)P33ING1B, Q9UK52; (HSA)ING1 [isoform], Q9H007; (HSA)ING1, Q9HD98; (HSA)ING1 [fragment], Q9HD99; (HSA)ING2, Q9H160; (HSA)ING1L,O95698; (MMU)Ing2, Q9ESK4; (MMU)2810011M06Rik, Q9CZD8; and (DMEL)CG7379, Q9VEF5. (B) Alignment of ING1 homolog MDS00105.2 motif region. The SWISS-PROT/TrEMBL accessions of the ING1 homolog sequences are as follows: (HSA)LOC51147 [P33ING1 homolog], Q9UNL4; (HSA)MY036, Q9H3J0; (HSA)MGC12557, AAH07781; (HSA)MGC4757 [similar to (MMU)1700027H23Rik], AAH13038; (HSA)MGC12080, AAH09127; (MMU)D6Wsu147e, Q9D7F9; (MMU)D6Wsu147e [variant]; (MMU)1810018M11Rik, Q9D8Y8; (MMU)1810018M11Rik [partial]; (MMU)1700027H23Rik, Q9D9V8; (HSA)MGC12485 [similar to (MMU)1819918M11Rik], Q9BS30; (DMEL)CG9293, Q9VJY8; (SPOM)C3G9.08, O42871; (ATHA)14013, Q9LIQ6; and (ATHA)F20D21.22, Q9SLJ4. (C) Alignment of the ING3 MDS00105.3 motif region. The SWISS-PROT/TrEMBL accessions of the other ING3 subfamily sequences are as follows: (HSA)P47ING3 [variant 1], Q9NXR8; (HSA)P47ING3 [variant 2], Q9HC99; (HSA)ING3, O60394; (MMU)p47Ing3, Q9ERB2; (MMU)13000 13A07Rik, Q9DBG0; (HSA)DKFZp586C1218, CAC48260; and (DMEL)CG6632, Q9VWS0.

This Article

  1. Genome Res. 12: 367-378

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