Genomic Signature Tags (GSTs): A System for Profiling Genomic DNA

Table 4.

Shared GSTs Between Two Different Bacteria

GST sequence Organisms Total Organism (count) Organism (count)
GCCGCTTAACCGCCGCA 2 4 Escherichia coli (3) Yersinia pestis(1)
GATCGCCGATCGTCCCG 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
GCAACGATATTGGTGAC 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
CCGCCCCGGAAATCACC 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
GACCTGTCCACCGGCAA 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
GGCTGTGGGTGGCGTTC 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
CTTGGCCGCTACACCAC 2 3 Pyrococcus abyssi (1) Pyrococcus horikoshii(2)
CTCCGCCGCTTGTGCGG 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
GTGGATGCCTTGGCATC 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
GCGACCCAGGAACAGCA 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
GGAGTCGATGTTATCGG 2 3 Mycobacterium leprae(1) Mycobacterium tuberculosis(2)
AAGCCGGTCGCCATCAT 2 2 Mesorhizobium loti(1) Sinorhizobium meliloti(1)
GTGACTTCTGCGGATGT 2 2 Chlamydia muridarum(1) Chlamydia trachomatis(1)
TGCACCGGAATGCGGAT 2 2 Mesorhizobium loti(1) Sinorhizobium meliloti(1)
CACCACCTCTCCTTCTA 2 2 Thermoplasma acidophilum(1) Thermoplasma volcanium(1)
TCGGACAGAACCTTGCG 2 2 Agrobacterium tumefaciens(1) Sinorhizobium meliloti(1)
ACGCCGAAGGTGATGGC 2 2 Mesorhizobium loti(1) Sinorhizobium meliloti(1)
AACGAAGATCAATTTCC 2 2 Chlamydia muridarum(1) Chlamydia trachomatis(1)
AATTAGAAAATTATGAC 2 2 Haemophilus influenzae(1) Pasteurella multocida(1)
CGGACTTCGGTCGGCTT 2 2 Mesorhizobium loti(1) Sinorhizobium meliloti(1)
CTCTCAACGTAGGGAAC 2 2 Pyrococcus abyssi(1) Pyrococcus horikoshii(1)
CCCATCACTATCAAGCC 2 2 Chlamydia muridarum(1) Chlamydia trachomatis(1)
AGCAGGTTGAAGGTTGA 2 2 Mycoplasma genitalium(1) Mycoplasma pneumoniae(1)
ATGCGCAAGTGCCATCT 2 2 Agrobacterium tumefaciens(1) Sinorhizobium meliloti(1)
CAGGTCGGCATTTAACC 2 2 Pyrococcus abyssi(1) Pyrococcus horikoshii(1)
AAGGTTCAACGTGGGTC 2 2 Thermoplasma acidophilum(1) Thermoplasma volcanium(1)
CGGGGAAACGTAGTAGC 2 2 Chlamydia muridarum (1) Chlamydia trachomatis(1)
CACAAGATCCAGGACCG 2 2 Mesorhizobium loti(1) Sinorhizobium meliloti(1)
AGCTAACCCCATTTTGT 2 2 Chlamydiam uridarum(1) Chlamydia trachomatis(1)
CAGCACTCCATATTTTA 2 2 Clostridium acetobutylicum(1) Pyrococcus horikoshii (1)
  • GSTs within 25 bp of the BamHI fragmentation site were omitted.

  • CATG omitted.

This Article

  1. Genome Res. 12: 1756-1765

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