Genomic Signature Tags (GSTs): A System for Profiling Genomic DNA

Table 2.

Correspondence Between Predicted and Actual Identifier Tag Frequencies

Identifier tag sequence Frequency
Predicted Actual
ATCTGGAGGTTCGGTTC 8 65
CGTCATCTCGCTGAACG 7 45
GATGTATTTACGGCGTC 5 34
CCCTGCGGTACGGGAGC 3 34
GCTGCATTGGCACCGTT 2 23
CCAGCATCAGCCAGCGC 2 22
TAGGCTCGAGCCGCGCC 3 20
TCGTTCAAATCAAAGGA 4 13
CTGATAAACCGGGATCG 2 13
AATCCTCACCTAACCGA 2 12
CTTTCGTTGGTTAGCGA 3 11
CCCCAGCCCTGGCCCGC 2 11
AACCGCGTATCAATCAG 2 11
TGCGTTTTCAGGACGGT 2  9
TTGGATCCGAAGGGGTT 3 unseen-contains  BamHI site
GGGATCCGAAGGGGTTC 2 unseen-contains  BamHI site
  • Complete lists of GSTs, in both order of abundance and position in the Yersinia pestis genome, are available via the internet at http://genome.bnl.gov/GSTs.

  • CATG omitted.

This Article

  1. Genome Res. 12: 1756-1765

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