Genome-wide Co-occurrence of Promoter Elements Reveals a cis-Regulatory Cassette of rRNA Transcription Motifs in Saccharomyces cerevisiae

Table 1B.

Co-occurrence of Novelcis-Regulatory Motifs

Motif1 Motif2 P-value
PAC mRRPE 3.7E-38
PAC mRRSE3 7.7E-32
mCDE22 mPTE18 8.5E-27
mMERE8 mMERE4 4.2E-23
mGCE11 mPTE18 2.6E-21
mMERE8 mRLFIBE12 5.1E-21
mRLFIBE12 mCDE22 6.0E-20
mPOE3 OAF1 1.2E-19
mOTFE10 mNSME29 4.2E-19
mMERE8 mITE11 2.2E-18
mRRPE mRRSE3 2.6E-11
PAC mRRSE10 8.5E-08
  • Names of motifs begin with ‘m’ to indicate that they were derived by running AlignACE (Hughes et al. 2000) on the genes from the following functional categories in the MIPS database: mRRPE, rRNA processing element; mRRSE, rRNA synthesis element; mCDE, cell death element; mPTE, phosphate transport element; mRLFIBE, regulation of lipid fatty acid and isoprenoid biosynthesis element; mPOE, peroxisomal organization element; mOTFE, other transport facilitators element; mNSME, nitrogen and sulfur metabolism element; mITE, ion transporters element.

  • Pairs having P-value < 7.9E-07 (i.e., 0.05/63190), a corrected P-value that may be taken if a false positive rate of 0.05 is assumed.

This Article

  1. Genome Res. 12: 1723-1731

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