Genome-wide Co-occurrence of Promoter Elements Reveals a cis-Regulatory Cassette of rRNA Transcription Motifs in Saccharomyces cerevisiae

Table 1A.

Co-occurrence of Well-Characterizedcis-Regulatory Motifs

Motif1 Motif2 P-value
Matalpha1 Matalpha2 1.7E-17
STRE Mig1 1.3E-12
Rpn4 Abf1 2.5E-07
Pdr Gal4 2.0E-04
Gcn4 Leu3 3.2E-04
Mcm1 ECB 3.3E-04
Bas1 CSRE 6.5E-04
Mcm1 SCB 7.9E-04
Rpn4 Ume6 8.0E-04
SFF SCB 1.3E-03
Mcm1 MCB 1.4E-03
STRE CSRE 1.4E-03
  • Only those promoters containing the Mcm1 and ECB motifs separated by a distance of 8 bp or more were considered.

  • Pairs having P-value < 7.50e-05 (i.e., 0.05/666), a corrected P-value that may be taken if a false-positive rate of 0.05 is assumed.

This Article

  1. Genome Res. 12: 1723-1731

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