Table 2.
The 20 Classes With Higher Rate of True Positives Learned by the Multilayer Perception (MLP) With an Output Threshold of τ = 0.5.
| Class | Class size | True positive (%) | True negative (%) |
| Ribosomal proteins | 170 | 79.6 | 97 |
| Mitochondrial organization | 294 | 54.6 | 90.6 |
| Organization of cytoplasm | 462 | 52.8 | 84.8 |
| Nuclear organization | 645 | 50.2 | 76.8 |
| Tricarboxylic-acid pathway | 17 | 47.6 | 99 |
| C-compound and carbohydrate transporters | 31 | 43.2 | 97.8 |
| rRNA transcription | 95 | 41.8 | 95.2 |
| Respiration | 54 | 41.2 | 96.8 |
| mRNA transcription | 427 | 38.4 | 80.2 |
| Peroxisomal organization | 33 | 37.8 | 97.4 |
| Organization of endoplasmatic reticulum | 134 | 36.6 | 94.2 |
| Organization of chromosome structure | 27 | 36.2 | 97.4 |
| Glyoxylate cycle | 5 | 35 | 99 |
| Proteolysis | 116 | 33.4 | 94.8 |
| Glycolysis and gluconeogenesis | 29 | 32 | 98.2 |
| C-compound and carbohydrate metabolism | 258 | 31.8 | 87.2 |
| Amino acid metabolism | 157 | 31 | 92.8 |
| Stress response | 90 | 28 | 95 |
| Nitrogen and sulphur metabolism | 50 | 27.8 | 97.2 |
| Organization of plasma membrane | 110 | 26 | 94.2 |
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The second column lists the number of genes in the class listed in the first column. The entries in the third and fourth columns are averages over five realizations of the three-fold cross-validation scheme.
