In Silico Model-Driven Assessment of the Effects of Single Nucleotide Polymorphisms (SNPs) on Human Red Blood Cell Metabolism

Table 1.

Molecular Characterization of Specific SNPs for Selected Cases of G6PD Variants Including DNA Sequence Change, Corresponding Amino-Acid Change, and Result

Variant Type Nucleotide change Amino-acid change Result
B+ normal none none
A+ nonchronic 376 A→G Asn→Asp polar to acidic
A− nonchronic 376 A→G Asn→Asp polar to acidic
202G→A Val→Met nonpolar to nonpolar
Mediterranean nonchronic 563 C→T Ser→Phe polar to nonpolar
Tsukui chronic 561-563 del 188/189 del
Minnesota chronic 637 G→T 213 Val→Leu nonpolar to nonpolar
Asahikawa chronic 695 G→A 232 Cys→Tyr slightly polar to nonpolar
Durham chronic 713 A→G 238 Lys→Arg basic to basic
Wayne chronic 769 C→G 257 Arg→Gly basic to nonpolar
Loma Linda chronic 1089 C→A 363 Asn→Lys polar to basic
Tomah chronic 1153 T→C 385 Cys→Arg slightly polar to basic
Iowa chronic 1156 A→G 386 Lys→Glu basic to acidic
Walter Reed chronic 1156 A→G 386 Lys→Glu basic to acidic
Iowa City chronic 1156 A→G 386 Lys→Glu basic to acidic
Springfield chronic 1156 A→G 386 Lys→Glu basic to acidic
Guadalajara chronic 1159 C→T 387 Arg→Cys basic to slightly polar
Iwate chronic 1160 G→A 387 Arg→His basic to acidic/basic
Niigata chronic 1160 G→A 387 Arg→His basic to acidic/basic
Yamaguchi chronic 1160 G→A 387 Arg→His basic to acidic/basic
Portici chronic 1178 G→A 393 Arg→His basic to acidic/basic
Alhambra chronic 1180 G→C 394 Val→Leu nonpolar to nonpolar
Tokyo chronic 1246 G→A 416 Glu→Lys acidic to basic
Fukushima chronic 1246 G→A 416 Glu→Lys acidic to basic
Atlanta chronic 1284 C→A 428 Tyr→End
Pawnee chronic 1316 G→C 439 Arg→Pro basic to nonpolar
Morioka chronic 1339 G→A 447 Gly→Arg nonpolar to basic
  • All data comes from Yoshida and Lin (1973); Vulliamy et al. (1988); Beutler (1990); Au et al. (2000); Fiorelli et al. (2000).

  • Most, but not all of the A variants have an amino-acid 202 mutation; some have the second mutation at another site.

This Article

  1. Genome Res. 12: 1687-1692

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