Using Text Analysis to Identify Functionally Coherent Gene Groups

Table 1A.

Gold Standard Functional Gene Groups

Functional classification Gene ontology code Genes Total articles referenced Unique articles referenced
Signal transduction GO:0007165 94 3484 1944
Cell adhesion GO:0007155 6 82 59
Autophagy GO:0006914 16 110 55
Budding GO:0007114 74 1692 979
Cell cycle GO:0007049 341 8399 4438
Biogenesis GO:0016043 459 6439 3840
Shape size control GO:0007148 54 1629 1014
Cell fusion GO:0006947 89 2495 1470
Ion homeostasis GO:0006873 43 667 363
Membrane fusion GO:0006944 6 212 209
Sporulation GO:0007151 27 646 553
Stress response GO:0006950 94 2603 1866
Transport GO:0006810 313 4559 2708
Amino acid metabolism GO:0006519 78 1594 1221
Carbohydrate metabolism GO:0005975 90 2719 1855
Electron transport GO:0006118 8 205 187
Lipid metabolism GO:0006629 90 1035 715
Nitrogen metabolism GO:0006807 15 264 229
Nucleic acid metabolism GO:0006139 676 12345 6674

This Article

  1. Genome Res. 12: 1582-1590

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