Table 1.
Four Data Sets Analyzed, Representing Both Affymetrix- and Two-Color cDNA Microarrays, Cell Cycle and Non-Cell Cycle Data Sets
| Name | Ratio based? | # of genes | # of points | Description |
| Cho | No | 3000 | 15 | Two cell cycles, two of original timepoints—dropped because of unreliability |
| CJRR (Cohen et al. 2002; Jelinsky et al. 2000;Robertson et al. 2000; Roth et al. 1998) | No | 3000 | 52 | YAP1/2 knockouts with peroxide and cadmium added, yeast A kinase TPK1/2/3 mutants, chemical and damaging agents, galactose, heat shock, and mating type |
| Gasch | Yes | 3000 | 175 | Various conditions: temperature shock; exposure to H2O2, menadione, diamide, and DTT; osmotic shock; amino acid starvation; nitrogen depletion; stationary phase |
| Spellman | Yes | 3000 | 75 | Cultures synchronized in cell cycle by three independent methods |
