Table 3.
Gene Amplification Within 2.9-Mb Region on Rice Chromosome 10
| Length (bp) | 2,883,802 | |
| G+C% | 43.3% | |
| ORFs | 426 | |
| TEs | 66 | |
| Genes (ORFs-TEs) | 360 | 100% |
| Homologous to GenBank | 225 | 62.5% |
| Homologous toArabidopsis | 196 | 54.4% |
| Amplified genes | 15 | |
| 8 with 2 copies | ||
| 4 with 3 copies | ||
| 1 with 5 copies | Putative transcription factor | |
| 1 with 27 copies | Glycine-rich protein | |
| 1 with 48 copies | TRAF/BTB-domain protein | |
| Amplified gene copies | 93 | 25.8% |
| Gene density | 8.0 kb/gene | |
| Genes/rice genome (total) | ∼49,000 | |
| Genes/rice genome (without amplification) | ∼36,000 | |
| Genes/Arabidopsisgenome | 25,498 |
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↵TEs include retrotransposons and DNA transposons.
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↵These are based on hits with an e-value less thane-5.
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↵Estimation based on 390-Mb genome size exclusive of centromeres (http://demeter.bio.bnl.gov/Oct30.html).
