Identification and Confirmation of a Module of Coexpressed Genes

Table 3.

A Module (the PDEF Module) of Genes That Is Expressed in Breast and Ovary Cancers

Coinc Total Gene Description
 9 46 H2AFO H2A histone family, member O
22 105 PSMD7 proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
16 104 NUCKS similar to rat nuclear ubiquitous casein kinase 2
14 51 FLJ10111 hypothetical protein FLJ10111
21 203 SQSTM1 sequestosome 1
10 356 GAPD glyceraldehyde-3-phosphate dehydrogenase
  • The genes are listed relative to PDEF (prostate derived Ets factor, a transcription factor), which is found in 27 different libraries. The table lists (Coinc) the number of libraries in which both PDEF and the listed gene are both found and (Total) the number of libraries in which the listed gene is found, but PDEF is not found. GAPD is shown for reference.

This Article

  1. Genome Res. 12: 1517-1522

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