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Table of Contents
October 2002; 12 (10)
REVIEW
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Mammalian Retroelements
Prescott L. Deininger
and
Mark A. Batzer
Genome Res.
October 1, 2002
12
:
1455
-
1465
;
doi:
10.1101/gr.282402
Abstract
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ARTICLE
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Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome
Zhaolei Zhang
,
Paul Harrison
,
and
Mark Gerstein
Genome Res.
October 1, 2002
12
:
1466
-
1482
;
doi:
10.1101/gr.331902
Abstract
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LETTERS
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Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes
Patrik Medstrand
,
Louie N. van de Lagemaat
,
and
Dixie L. Mager
Genome Res.
October 1, 2002
12
:
1483
-
1495
;
doi:
10.1101/gr.388902
Abstract
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Identification of the Single Base Change Causing the Callipyge Muscle Hypertrophy Phenotype, the Only Known Example of Polar Overdominance in Mammals
Brad A. Freking
,
Susan K. Murphy
,
Andrew A. Wylie
,
Simon J. Rhodes
,
John W. Keele
,
Kreg A. Leymaster
,
Randy L. Jirtle
,
and
Timothy P.L. Smith
Genome Res.
October 1, 2002
12
:
1496
-
1506
;
Published in Advance
September 13, 2002
,
doi:
10.1101/gr.571002
Abstract
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Conservation of the Biotin Regulon and the BirA Regulatory Signal in Eubacteria and Archaea
Dmitry A. Rodionov
,
Andrei A. Mironov
,
and
Mikhail S. Gelfand
Genome Res.
October 1, 2002
12
:
1507
-
1516
;
doi:
10.1101/gr.314502
Abstract
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Identification and Confirmation of a Module of Coexpressed Genes
H. Garrett R. Thompson
,
Joseph W. Harris
,
Barbara J. Wold
,
Stephen R. Quake
,
and
James P. Brody
Genome Res.
October 1, 2002
12
:
1517
-
1522
;
doi:
10.1101/gr.418402
Abstract
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Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Lee Ann McCue
,
William Thompson
,
C. Steven Carmack
,
and
Charles E. Lawrence
Genome Res.
October 1, 2002
12
:
1523
-
1532
;
Published in Advance
September 13, 2002
,
doi:
10.1101/gr.323602
Abstract
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Supplemental Research Data
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Molecular Characterization of a Chromosomal Rearrangement Involved in the Adaptive Evolution of Yeast Strains
José E. Pérez-Ortı́n
,
Amparo Querol
,
Sergi Puig
,
and
Eladio Barrio
Genome Res.
October 1, 2002
12
:
1533
-
1539
;
doi:
10.1101/gr.436602
Abstract
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Inferring Domain–Domain Interactions From Protein–Protein Interactions
Minghua Deng
,
Shipra Mehta
,
Fengzhu Sun
,
and
Ting Chen
Genome Res.
October 1, 2002
12
:
1540
-
1548
;
doi:
10.1101/gr.153002
Abstract
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Supplemental Research Data
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Mosaic Organization of Orthologous Sequences in Grass Genomes
Rentao Song
,
Victor Llaca
,
and
Joachim Messing
Genome Res.
October 1, 2002
12
:
1549
-
1555
;
Published in Advance
September 13, 2002
,
doi:
10.1101/gr.268302
Abstract
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Draft Sequencing and Comparative Genomics of
Xylella fastidiosa
Strains Reveal Novel Biological Insights
Anamitra Bhattacharyya
,
Stephanie Stilwagen
,
Gary Reznik
,
Helene Feil
,
William S. Feil
,
Iain Anderson
,
Axel Bernal
,
Mark D'Souza
,
Natalia Ivanova
,
Vinayak Kapatral
,
Niels Larsen
,
Tamara Los
,
Athanasios Lykidis
,
Eugene Selkov, Jr.
,
Theresa L. Walunas
,
Alexander Purcell
,
Rob A. Edwards
,
Trevor Hawkins
,
Robert Haselkorn
,
Ross Overbeek
,
Nikos C. Kyrpides
,
and
Paul F. Predki
Genome Res.
October 1, 2002
12
:
1556
-
1563
;
Published in Advance
September 13, 2002
,
doi:
10.1101/gr.370702
Abstract
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METHODS
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Comparative Analysis of Multiple Genome-Scale Data Sets
Margaret Werner-Washburne
,
Brian Wylie
,
Kevin Boyack
,
Edwina Fuge
,
Judith Galbraith
,
Jose Weber
,
and
George Davidson
Genome Res.
October 1, 2002
12
:
1564
-
1573
;
doi:
10.1101/gr.225402
Abstract
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Supplemental Research Data
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Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation
Francis D. Gibbons
and
Frederick P. Roth
Genome Res.
October 1, 2002
12
:
1574
-
1581
;
doi:
10.1101/gr.397002
Abstract
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Using Text Analysis to Identify Functionally Coherent Gene Groups
Soumya Raychaudhuri
,
Hinrich Schütze
,
and
Russ B. Altman
Genome Res.
October 1, 2002
12
:
1582
-
1590
;
doi:
10.1101/gr.116402
Abstract
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RESOURCES
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An
Asc
I Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands
Zunyan Dai
,
Dieter Weichenhan
,
Yue-Zhong Wu
,
Julia L Hall
,
Laura J. Rush
,
Laura T. Smith
,
Aparna Raval
,
Li Yu
,
Daniela Kroll
,
Joerg Muehlisch
,
Michael C. Frühwald
,
Pieter de Jong
,
Joe Catanese
,
Ramana V. Davuluri
,
Dominic J. Smiraglia
,
and
Christoph Plass
Genome Res.
October 1, 2002
12
:
1591
-
1598
;
doi:
10.1101/gr.197402
Abstract
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Supplemental Research Data
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The Generic Genome Browser: A Building Block for a Model Organism System Database
Lincoln D. Stein
,
Christopher Mungall
,
ShengQiang Shu
,
Michael Caudy
,
Marco Mangone
,
Allen Day
,
Elizabeth Nickerson
,
Jason E. Stajich
,
Todd W. Harris
,
Adrian Arva
,
and
Suzanna Lewis
Genome Res.
October 1, 2002
12
:
1599
-
1610
;
doi:
10.1101/gr.403602
Abstract
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The Bioperl Toolkit: Perl Modules for the Life Sciences
Jason E. Stajich
,
David Block
,
Kris Boulez
,
Steven E. Brenner
,
Stephen A. Chervitz
,
Chris Dagdigian
,
Georg Fuellen
,
James G.R. Gilbert
,
Ian Korf
,
Hilmar Lapp
,
Heikki Lehväslaiho
,
Chad Matsalla
,
Chris J. Mungall
,
Brian I. Osborne
,
Matthew R. Pocock
,
Peter Schattner
,
Martin Senger
,
Lincoln D. Stein
,
Elia Stupka
,
Mark D. Wilkinson
,
and
Ewan Birney
Genome Res.
October 1, 2002
12
:
1611
-
1618
;
doi:
10.1101/gr.361602
Abstract
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Supplemental Research Data
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CDART: Protein Homology by Domain Architecture
Lewis Y. Geer
,
Michael Domrachev
,
David J. Lipman
,
and
Stephen H. Bryant
Genome Res.
October 1, 2002
12
:
1619
-
1623
;
doi:
10.1101/gr.278202
Abstract
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ERRATUM
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Erratum for vol. 12, p. 1159
Genome Res.
October 1, 2002
12
:
1624
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October 2002;
12
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