Associating Genes with Gene Ontology Codes Using a Maximum Entropy Analysis of Biomedical Literature

Table 5B.

Performance on Genes Using BLASTObtained Articles

Category Num Exact match Partial match
Rank Rank
1 2 3 1 2 3
Metabolism 557 33.21% 22.44% 14.18% 42.73% 28.01% 16.52%
Cell_cycle 97 37.11% 21.65% 7.22% 54.64% 32.99% 16.49%
Signal_transduction 36 41.67% 25.00% 8.33% 47.22% 27.78% 13.89%
Meiosis 1 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
Intracellular_protein_traffic 38 23.68% 13.16% 13.16% 55.26% 26.32% 31.58%
Sporulation 9 0.00% 0.00% 0.00% 11.11% 55.56% 22.22%
Cell_fusion 20 0.00% 0.00% 0.00% 40.00% 30.00% 10.00%
Stress_response 19 5.26% 0.00% 15.79% 26.32% 42.11% 21.05%
Biogenesis 130 18.46% 13.85% 9.23% 46.15% 27.69% 20.00%
Invasive_growth 0 N/A N/A N/A N/A N/A N/A
Transport 26 69.23% 7.69% 11.54% 76.92% 19.23% 30.77%
Ion_homeostasis 12 8.23% 0.00% 0.00% 25.00% 16.67% 8.33%
  • Only those genes with three or more articles were annotated.

This Article

  1. Genome Res. 12: 203-214

Preprint Server