Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome

Table 1.

Comparison of Portions of the XhoI with the Corresponding Restriction Map

Region with discrepancy Sequence fragment size (kb) Optical map fragment size (kb) Difference (kb) % relative error Standard deviation
1 3.12 3.38 −0.27 8.60 0.65
30.82 31.53 −0.71 2.32 3.60
25.00 31.82 −2.12 7.14 4.64
4.70
7.72 7.89 −0.17 2.16 1.12
18.16 18.48 −0.32 1.78 2.43
O 2.43 3.12 −0.69 28.40 0.70
4.02 4.50 −0.48 11.94 0.73
0.31 0.31
7.95 −7.95 0.98
40.90 46.25 −5.35 13.08 4.45
24.44 23.54 0.90 3.68 2.00
R 8.00 8.02 −0.02 0.25 1.06
47.68 49.36 −1.68 3.52 5.29
6.47 −6.47 0.84
21.72 19.12 2.60 11.97 2.33
8.88 8.32 0.56 6.31 1.34
V 29.95 31.06 −1.12 3.73 4.73
4.48 4.61 −0.13 2.91 1.02
22.42 39.70 0.60 1.48 3.05
17.88
17.01 17.33 −0.32 1.88 2.24
3.82 3.61 0.21 5.54 0.97
2 3.17 3.21 −0.04 1.23 0.75
25.93 25.94 −0.01 0.04 2.86
13.60 39.11 1.29 3.18 2.45
14.32
12.49
70.73 72.05 −1.32 1.87 3.99
36.14 34.70 1.44 3.99 2.25
3 72.69 72.62 0.07 0.10 5.21
24.39 23.58 0.82 3.36 1.98
79.67 113.50 1.61 1.40 9.42
35.44
28.22 27.37 0.84 2.99 2.38
20.06 22.16 −2.10 10.47 1.21

This Article

  1. Genome Res. 11: 1584-1593

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