Drosophila Euchromatic LTR Retrotransposons are Much Younger Than the Host Species in Which They Reside

Table 2.

Element Family Average Pairwise Nucleotide Identities

Element (sample size) Average pairwise identities Calculated divergence time (millions of years)
17.6(6) 99.676525 ± 0.000862996 0.1078252 ± 0.028766517
297(8) 99.846149 ± 0.000986654 0.051283679 ± 0.032888452
412(19) 99.6790517 ± 0.001212138 0.106982767 ± 0.040404609
antonia(4) 98.8624153 ± 0.00499742 0.379194889 ± 0.166580662
blastopia(6) 99.7571929 ± 0.000753808 0.080935711 ± 0.025126928
blood(21) 99.8221958 ± 0.001247047 0.059268056 ± 0.041568245
copia(23) 99.7509078 ± 0.001175924 0.083030736 ± 0.039197471
wolfman (2) 99.889276 0.036908
hamilton(2) 99.973008 0.008997333
HMS Beagle (3)  #'s 4, 5 and 6 99.448482 ± 0.00441751 0.172349167 ± 0.138047175
HMS Beagle (4)  #'s 1, 2, 3, 7 and 8 99.852204 ± 0.0008726 0.04618625 ± 0.02726868
mazi(4) 99.8201147 ± 0.000824226 0.059961778 ± 0.027474189
mdg1(5) 99.6931778 ± 0.000748225 0.102274067 ± 0.024940837
mdg3(8) 99.6225424 ± 0.001529709 0.12581919 ± 0.050990305
nomad(4) 99.9075055 ± 0.000276762 0.0308315 ± 0.009225413
roo(40) 99.6887925 ± 0.001617852 0.103735823 ± 0.053928391
tirant(6) 99.9374788 ± 0.000253444 0.0208404 ± 0.008448124
transpac(4) 99.882341 ± 0.000408498 0.039219778 ± 0.013616585

This Article

  1. Genome Res. 11: 1527-1540

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