Predicting Splice Variant from DNA Chip Expression Data

Table 3.

Candidate Probes in Splice Variants Predicted from 10 Normal Rat Tissues

Probe set Tissue FR Y X Probes/cluster Probes/gene
M26052 Bladder −3.754 77 52–61 10 10
D13906 Kidney 2.398 15 112–114 3 3
J03588 Kidney −3.106 37 131–133 3 3
M32801 Kidney −2.941 85 24–26 3 3
M32801 Liver 2.543 85 24–26 3 3
M34007 Testis −2.642 209 213–215 3 3
X07467 Liver −2.9 165 152–154 3 3
X62908 Heart −2.6 179 133–135 3 3
D16478 Placenta −3.634 17 194–195 2 2
D30035 Heart −3.717 21 225–226 2 2
K03245 Kidney −3.808 241 96–97 2 2
K03245 Liver 3.842 241 96–97 2 2
V01218 Bladder −4.33 257 103–104 2 2
Z32519 Testis −3.334 199 36–37 2 2
  • The list contains the top 12 candidates selected from the pool of predicted splice variants in Table 2 based on a decision matrix: i, probes/cluster (from high to low); ii, probes/gene (set equal to probes/cluster); iii, log final ratio FR (>ln10). The identity of each probe set is represented in the first column as Gen Bank accession no.; (Tissue) the tissue type from where the splice variant was predicted; (FR) log final ratio; + and − values represent presence and absence of expression, respectively. X and Yrepresent coordinates of individual probes on the chip detecting a splice region. Probes/cluster and Probes/gene indicate the number of adjacent probes and the total number of predicted probes for the gene, respectively.

This Article

  1. Genome Res. 11: 1237-1245

Preprint Server