Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis

Table 3.

Saccharomyces Genes not Present inS. cerevisiae

Species Predicted protein Closest homolog P-value Accession no.
S. bayanus putative amidase S. pombe 2.3e-24 pir‖T39112
S. cariocanus putative amidase S. pombe 8.9e-46
S. paradoxus Ty-5 associated protein S. paradoxus 8.6e-40 gb‖U19263.1
S. castellii Squalene synthase C. glabrata 2.6e-07 dbj‖BAB12207.1
NAD(P)H dehydrogenase P. aeruginosa 3.1e-40 gb‖AAG04613.1
hypothetical protein C. albicans 6.2e-35 emb‖CAA21971.1
putative p150 H. sapiens 5.1e-25 gb‖AAA88038.1
unnamed protein H. sapiens 5.3e-09 dbj‖BAA91193.1
hyphally regulated protein C. albicans 4.7e-08 pir‖S58135
S. kluyveri hypothetical protein X. fastidiosa 1.8e-08 gb‖AAF83652.1
hypothetical protein S. pombe 5.9e-30 pir‖T42242
RNA binding protein,  pumilio-family S. pombe 1.3e-09 pir‖T41065
probable dipeptidase S. pombe 3.0e-26 pir‖T41665
WSC4 homologue K. lactis 6.5e-11 emb‖CAB50897.1
hypothetical protein jhp1324 H. pylori 6.9e-15 pir‖G71821
coiled-coil protein S. Pombe 9.1e-13 pir‖T40559
sphingomyelin phosphodiesterase M. musculus 1.2e-17 pir‖S27393
neuronal thread protein AD7c-NT H. sapiens 1.6e-14 gb‖AAC08737.1
ser/arg-rich protein specific kinase M. musculus 3.9e-06 pir‖JC5930
hypothetical protein SPAC630.13c S. pombe 2.9e-19 pir‖T38991
purine nucleoside permease C. albicans 1.8e-41 gb‖AAC64324.1
beta-glucosidase K. lactis 2.1e-59 emb‖CAA29353.1
stearoyl-CoA desaturase C. albicans 2.1e-06 pir‖T18228
iron/ascorbate dependent  oxidoreductase C. jejuni 7.6e-08 emb‖CAB73453.1
N-carbamoyl-amidohydrolase P. aeruginosa 1.5e-07 gb‖AAG03833.1
Nef attachable protein H. sapiens 2.9e-08 dbj‖BAA95214.1
hypothetical protein B0252.2 C. elegans 1.5e14 pir‖T15291
unnamed protein product H. sapiens 7.2e-20 dbj‖BAA91131.1
CLIP-170 R. norvegicus 6.5e-06 emb‖CAB92974.1
putative transaminase L. lactis 1.5e-19 emb‖CAB97148.1
splicing factor u2af 35 kd subunit S. pombe 1.6e-18 pir‖T39243
cytoskeleton assembly control protein C. albicans 3.7e-09 gb‖AAC62773.1
Rbt2p (repressed by TUP1) C. albicans 2.0e-08 gb‖AAG09788.1
uric acid-xanthine permease E. nidulans 1.7e-10 emb‖CAA50681.1
S. unisporus hypothetical protein SPAC1687.07 S. pombe 3.4e-11 pir‖T37750
homolog of co-factor B Alp11p S. pombe 1.5e-10 pir‖T38860
polyprotein O. sativa 2.1e-32 gb‖AAD27547.1
  • Alignments having a P value <1.0e-05 are shown. Sequences that had high scoring alignments to known genes were not included if they also had significant similarity to S. cerevisiae rDNA sequence.

This Article

  1. Genome Res. 11: 1175-1186

Preprint Server