Table 1.
Features Identified in Rice Sequence Data
| Feature | Position | Protein similarity/EST matches |
| C15 | C/2504-3864 | |
| W30 | W/8619-9131 | hypothetical protein F30H5.2, Caenorhabditis elegans,1.6e-05 |
| W50 | W/12306-12944 | glycine-rich protein GRP22, rape, PIR:S31415, 1.6e-36 |
| C75 | C/16037-17967 | PREG like protein, Arabidopsis thaliana, EMBL:AB012239, 5.2e-38 |
| C90 | C/20929-24200 | DNA-binding protein ABF1—wild oat, PIR:S61413, 5.0e-28 |
| C110 | C/30589-31850 | |
| C135 | C/38132-41466 | predicted protein, Arabidopsis thaliana, PIR:T49221, 8.7e-133/D25127 |
| C180 | C/47976-49075 | predicted protein,Oryza sativa, EMBL:AC026815, 1.9e-23 |
| C200 | C/50060-56958 | 27k vesicle-associated membrane protein-associated protein (VAMP), curled-leaved tobacco, EMBL:AB018117, 4.8e-84 |
| C202 | C/58901-61517 | plastid ribosomal protein L19 precursor, Spinacia oleracea, EMBL:AF250384, 5.3e-59,/C74047 |
| W230 | W/62697-64415 | extensin-like protein—maize, PIR:S49915, 1.2e-06,/AU030763, AU070696,AU030762 |
| tRNA | C/64886-65017 | tRNA predict as a tRNA- Arg : anticodon acg |
| tRNA | C/64886-64957 | tRNA predict as a tRNA- Pro : anticodon ggg |
| W265 | W/65017-67265 | cAMP inducible 2 protein, Mus musculus, EMBL:AF121081, 1.5e-123 |
| C285 | C/70640-71035 | |
| transposon | C/77159-80730 | transposon |
| W325 | W/83990-84706 | glycine-rich protein 2, Arabidopsis thaliana, PIR:T05494, 7.5e-09 |
| C345 | C/85408-87116 | uclacyanin 3, Arabidopsis thaliana, PIR:T49223, 3.3e-36/BE040770, BE040904,AU071152, AU071239, AU070738, AU071112, AU071195, AU070659,AU070774, AU071224, AU095618, AU163454, AU071095, AU070835, AU071193,AU070840, C25085 |
| W380 | W/90519-91174 | |
| C395 | C/91818-95108 | predicted protein, Arabidopsis thaliana, PIR:T48310, 3.7e-28 |
| W420 | W/96931-97865 | |
| W435 | W/100319-102879 | predicted protein, Oryza sativa, EMBL:AB026295, 8.5e-12 |
| C440 | C/104495-104992 | |
| W455 | W/106602-110890 | GTP-binding protein—maize, PIR:B38202, 2.7e-136/BE039980, AU092678, AU092609,AU092889, AU030259, AU064907, AU064033, D49344, C93488, D2387, C25096,AU066159, AU066160, AU030258, C28045, C25059, C27780, D22939, AU057614,C28341 |
| W485 | W/120269-121903 | probable triacylglycerol lipase, Arabidopsis thaliana, PIR:E71435, 2.3e-110/AU101257,AU064146, AU064563, AU064925, AU065141, AU065117,AU094966 |
| W495 | W/122503-126090 | probable enoyl-CoA hydratase, Arabidopsis thaliana, PIR:C71435, 4.6e-60 |
| W505 | W/126711-129864 | probable enoyl-CoA hydratase, Arabidopsis thaliana, PIR:C71435, 5.7e-64 |
| W535 | W/134248-136831 | protein kinase (EC 2.7.1.37) 5, Arabidopsis thaliana, PIR:JN0505, 4.8e-138 |
| C555 | C/137352-143243 | predicted protein,Arabidopsis thaliana, EMBL:AB008267, 3.1e-81 |
| W595 | W/145530-149814 | ubiquitin thiolesterase (EC3.1.2.15) L3, human, PIR:A40085, 3.3e-52/AU058175,C25250 |
| C600 | C/150409-152412 | bZIP protein,Arabidopsis thaliana, PIR:T49227, 5.4e-73,/AU163243 |
| C635 | C/159754-160665 | CDBPMesembryanthemum crystallinum AP2-related transcription factor, EMBL:AF245119, 7.9e-51/ AU057740,AU083516 |
| C650 | W/164858-168510 | predicted protein,Arabidopsis thaliana, PIR:T00408, 2.0e-77 |
| W700 | W/180768-181805 | ethylene responsive element binding factor 5, Arabidopsis thaliana, PIR:T52020, 1.1e-35 |
| C740 | C/192640-193413 | 3-isopropylmalate dehydratase-like protein (small subunit), Arabidopsis thaliana, PIR:T47781, 4.5e-64 /AU172969, AU163547, AU096007,AU096006, D22329, AU101178, AU162746, AU094753,AU101179 |
| W760 | W/195850-197387 | predicted protein,Arabidopsis thaliana, 1.8e-10 |
| C780 | C/200773-205219 | predicted protein, Arabidopsis thaliana,EMBL:AB023044 |
| C785 | C/209473-210472 | |
| W815 | W/211666-217666 | predicted protein, Arabidopsis thaliana, EMBL:AC024174, 1.6e-244 |
| C825 | C/219153-221701 | kinase-like transmembrane protein TMKL1 precursor, Arabidopsis thaliana,PIR:S39476, 1.8e-49,/AU056887 |
| W855 | W/224272-224625 | |
| C870 | C/225607-226540 | predicted protein, Arabidopsis thaliana, EMBL:ATH288958, 9.9e-13 |
| C875 | C/228468-234134 | predicted protein,Arabidopsis thaliana, EMBL:AB023044, 1.5e-98 |
| W920 | W/235513-239385 | CDC23, human, EMBL:AB011472, 7.0e-138,/C28583 |
| W930 | W/244097-247111 | LDJ2 (DnaJ) protein, leek, PIR:S42031, 8.0e-226/AU031322, C26206, AU030551, AU092294,AU101483, C28691, AU031323, AU070856, AU070832, D38865,D38877 |
| W940 | W/248749-249612 | transcription factor TINY,Arabidopsis thaliana, PIR:T01076, 7.4e-39 |
| W950 | W/249771-250715 | probable tonoplast aquaporin—maize, PIR:T01648, 9.7e-117/D23748, AU173162, AU163445,AU083016, D24190, D24763, AU031632, AU065449, AU173163,D24895 |
| Retrotransposon | W/256930-263084 | Ty3/Gypsy-like retrotransposon |
| C1015 | C/263711-266955 | predicted protein,Oryza sativa, EMBL:AP000399, 0.0 |
| W1050 | W/270285-271770 | hypothetical protein,Arabidopsis thaliana, PIR:G71442, 1.7e-80 |
| C1075 | C/272186-272851 | predicted protein,Oryza sativa, EMBL:AC051633, 3.5e-23 |
| W1110 | W/280506-283120 | predicted protein,Arabidopsis thaliana, PIR:T05538, 8.3e-24/BE230101,BE230297 |
| C1125 | C/284043-285083 | acetylglutamate kinase-like protein, Arabidopsis thaliana, PIR:T46192, 8.0e-113 |
| C1145 | C/286907-288305 | |
| C1190 | C/305291-305968 | AP2 domain transcription factor, Arabidopsis thaliana,EMBL:AC006068, 1.9e-40 |
| W1205 | W/310298-310597 | predicted protein, Oryza sativa, EMBL:AP002094, 8.3e-37 |
| C1225 | C/312769-313464 | fibroin-2, Araneus diadematus, EMBL:AD47854, 1.5e-13 |
| W1245 | W/322960-323955 | |
| C1265 | C/331539-332006 | transcription factor TINY—Arabidopsis thaliana, PIR:T01076, 6.4e-17 |
| C1275 | C/332068-332877 | tonoplast intrinsic protein 1 (TIP1), Hordeum vulgare, EMBL:AF254799, 4.9e-90/AU173162,D23748, AU163445, AU083016, D24190, D24763, AU065449, D24895 |
