Table 4.
Known and Potential Restriction Sites (RS) of Size 4 and 6 in Bacterial Genomes
| Species | %G + C | Length 4 | Length 6 | ||||
| RS | Potential RS | RS | Potential RS | ||||
| aepe | 56.5 | ? | NA | ? | NA | ||
| aqae | 43.5 | ? | TCGA, GGCC, CTAG, CCGG, GCGC | ? | CGTACG, AGTACT, CTCGAG, GATATC, GAGCTC | ||
| arfu | 48.6 | ? | GATC, CTAG, CGCG, GCGC, GGCC | ? | CTCGAG, GAGCTC, GTCGAC, AAGCTT, CAGCTG | ||
| basu | 43.5 | GGCC, CCGG, CGCG, TCGA | AATT, CATG, GATC, TGCA, ACGT | ATCGAT, CTGCAG, GGATCC, TCCGGA | AAATTT, ATATAT, GAGCTC, CAGCTG, AATATT | ||
| bobu | 28.6 | ? | TATA, AATT, GTAC, CATG, ACGT | ? | NA | ||
| caje | 30.5 | ? | GCGC, ACGT, GATC, CATG, GGCC | ? | GAATTC, GATATC, GAGCTC, ATGCAT, GTATAC | ||
| chpn | 40.5 | ? | CTAG, ATAT, CCGG, GTAC, TGCA | ? | NA | ||
| chtr | 41.3 | ? | TATA, CTAG, AATT, ATAT, GTAC | ? | NA | ||
| esco | 50.8 | GATC | GGCC, CTAG, CGCG, TATA, CATG | AAGCTT, AGCGCT, AGGCCT, AGTACT, ATGCAT, CACGTG, CCGCGG, CGGCCG, GAATTC, GAGCTC, GATATC, GCCGGC, GCGCGC, GGCGCC, GGGCCC, GGTACC, TACGTA | CTGCAG, CTGCAG, TCCGGA, GCATGC, GTCGAC | ||
| hain | 38.2 | CGCG, GCGC, CATG, CCGG | GGCC, TATA, TTAA, AATT, TCGA | AAGCTT | GTTAAC, TAATTA, GAATTC, GATATC, GTGCAC | ||
| hepy | 38.9 | GATC, TCGA, GGCC | GCGC, ACGT, CGCG, AGCT, GTAC | ? | GCGCGC, GATATC, GAATTC, GCTAGC, TCTAGA | ||
| meja | 31.4 | CTAG, GATC, GTAC | GGCC, CATG, GCGC, ATAT, TATA | ? | GTTAAC, CATATG, GTATAC, GAGCTC, GATATC | ||
| meth | 49.5 | GATC | NA | ? | NA | ||
| myge | 31.7 | ? | TATA, AGCT, CATG, TGCA, CTAG | ? | GAATTC, TAATTA, AAGCTT, GGATCC, GGTACC | ||
| myle | 57.8 | ? | NA | ? | NA | ||
| mypn | 40.0 | ? | NA | ? | CTTAAG, ATTAAT, AAGCTT, AAATTT, CTCGAG | ||
| mytu | 65.6 | ? | NA | ? | NA | ||
| neme | 51.8 | GATC | GGCC, CCGG, CATG, AATT, TGCA | CAGCTG | GGCGCC, CCGCGG, CGCGCG, GCGCGC, CTGCAG | ||
| psae | 66.6 | ? | CTAG, CGCG, GTAC, GGCC, AGCT | AGATCT, CAGCTG, CCCGGG, CCGCGG, CTCGAG, CTGCAG, GCATGC, GGATCC | GAGCTC, CGATCG, CGGCCG, GTCGAC, AAGCTT | ||
| pyab | 44.7 | ? | NA | ? | GTTAAC, GCTAGC, GTCGAC, CCTAGG, AGGCCT | ||
| pyho | 42.0 | ? | NA | ? | NA | ||
| ripr | 29.0 | ? | TATA, AATT, CTAG, TTAA, TGCA | ? | TAATTA, GGTACC, GATATC, GGATCC, GAGCTC | ||
| sysp | 47.7 | CCGG | CGCG, GGCC, GCGC, TGCA, TATA | ATCGAT, CCGCGG, TGATCA, TTCGAA | GGCGCC, TGCGCA, GAATTC, CAGCTG, ACCGGT | ||
| thma | 46.2 | CGCG | CTAG, ATAT, TATA, AGCT, GATC | ? | CACGTG, GTCGAC, CGATCG, AAATTT, ACGCGT | ||
| trpa | 52.8 | GATC | TATA, CTAG, GGCC, ACGT, ATAT | ? | AAATTT, GCGCGC, CTGCAG, GAATTC, ACATGT | ||
| urur | 25.5 | ? | TATA, TTAA, CATG, AGCT, TCGA | ? | NA | ||
-
NA, genomes where palindromes are not avoided.
-
?, unknown RS in the species.
-
See Methods for species abbreviations.
