Table 1.
The Interspersed Repeat Content of the CMT1A/HNPP Region
| Repeat type | Total no. of elements | Coverage (bp) | Coverage (%) |
| SINEs | 703 | 168,239 bp | 11.84% |
| Alus | 511 | 141,709 bp | 9.97% |
| MIRs | 192 | 26,530 bp | 1.87% |
| LINEs | 463 | 262,132 bp | 18.45% |
| LINE1 | 245 | 190,833 bp | 13.43% |
| LINE2 | 190 | 59,880 bp | 4.21% |
| Other LINEs | 28 | 11,419 bp | 0.81% |
| LTR elements | 246 | 115,140 bp | 8.10% |
| MaLRs | 120 | 49,012 bp | 3.45% |
| Retroviral | 50 | 21,746 bp | 1.53% |
| MER4 group | 43 | 29,094 bp | 2.05% |
| Other LTRs | 33 | 15,288 bp | 1.07% |
| DNA elements | 194 | 48,268 bp | 3.40% |
| MER1 type | 135 | 28,178 bp | 1.98% |
| MER2 type | 26 | 11,345 bp | 0.80% |
| Mariners | 8 | 4,332 bp | 0.30% |
| Other DNA elements | 25 | 4,413 bp | 0.32% |
| Unclassified | 2 | 319 bp | 0.02% |
| Total interspersed repeats | 1608 | 594,098 bp | 41.80% |
| Small RNA | 5 | 668 bp | 0.05% |
| Simple repeats | 247 | 13,610 bp | 0.96% |
| Low complexity | 144 | 8,140 bp | 0.57% |
| Total | 2004 | 616,328 bp | 43.37% |
| Total sequence length | 1,421,129 bp | ||
| GC % | 41.57% |
