The Integration of HINT Consensus and Ewing and Green's Assemblies into the Human Genome Draft
| Comparison of Mapped Transcripts | ||
| HINT | Ewing and Green (EG) | |
| Transcripts mapped | 43,484 | 29,582 |
| HSP length (kb) | 34,226 | 12,723 |
| Average BLAST score to genome | 472 | 490 |
| Overall sequence identity with genome | 93.77% | 95.43% |
| Unique transcripts | 28,026 | 11,002 |
| HSP length (kb) | 24,568 | 3,452 |
| Average BLAST score to genome | 471 | 490 |
| Overall sequence identity with genome | 93.53% | 95.18% |
| Comparison of Exons in Transcripts | ||
| HINT vs. EG | EG vs. HINT | |
| Transcripts with an exact exon overlap | 5,363 | 5,675 |
| HSP length (kb) | 1,731 | 1,731 |
| Average BLAST score to genome | 475 | 490 |
| Overall sequence identity with genome | 93.86% | 95.25% |
| Transcripts with an exon extended | 7,580 | 4,759 |
| HSP length (kb) | 4,682 | 2,129 |
| Average BLAST score to genome | 472 | 490 |
| Overall sequence identity with genome | 93.88% | 95.69% |
| Transcripts with an exon truncated | 5,142 | 2,012 |
| HSP length (kb) | 1,724 | 2,989 |
| Average BLAST score to genome | 471 | 490 |
| Overall sequence identity with genome | 93.62% | 96.02% |
| Transcripts with an exon overhanging | 229 | 850 |
| HSP length (kb) | 253 | 656 |
| Average BLAST score to genome | 463 | 483 |
| Overall sequence identity with genome | 91.41% | 93.32% |
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(HSP) High-scoring segment pair, representing exons. AverageBLAST score was obtained by dividing the totalBLAST score by the total length of the HSPs involved, represented as per 100 base pair HSP. Overall sequence identity was similarly averaged by the total length of HSP involved.
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(Overlap) HSPs overlap by ± 2 base pairs on either side between the HSPs of HINT and EG.
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(Extended) HSPs from one index were longer than the other one.
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(Truncated) HSPs from one index were shorter than the other one. In both cases, the positions of two HSPs agreed on either 5′ or 3′ side of their HSPs within ± 2 base pairs.
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(Overhanging) both the 5′ and 3′ positions of the two HSPs disagreed (> ± 2 base pairs).
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(kb) Kilobase pairs.
