From First Base: The Sequence of the Tip of the X Chromosome of Drosophila melanogaster, a Comparison of Two Sequencing Strategies

Table 2.

P-element Insertions in Divisions 1–3

Insertion line EMBL-Bank accession no. Cytology Cosmid or BAC Hits to gene
l(1)G0142 AJ299992 1B1-2 BACR37P7 cin
l(1)G0399 AJ299993 cos171D11 EG:171D11.6
EP(1)1320 AQ073187 1B5-6 cos171D11 EG:171D11.1
EP(1)1398 AQ073214 1B5-6 cos171D11 EG:171D11.1
EP(1)0356 AQ025323 1B7-8 cos171D11 svr
l(1)G0319 AJ299994 1B7-10 cos65F1 elavand arginase
l(1)G0031 AJ299996 1B cos65F1 elavandarginase
EP(1)1117 AQ025390 1B7-8 cos65F1 elavandarginase
EP(1)0452 AQ025344 1B7-8 cos65F1 elavandarginase
l(1)G0471 AJ299997 1B11-14 cos115C2 BetweenRpL36 andl(1)Bi
EP(1)1412 AQ025449 1B12-14 cos115C2 Dredd
EP(1)1216 AQ254762 1B13-14 cos115C2 EG:115C2.10
l(1)G0037 AJ300000 1C cos115C2 skpA
l(1)G0109 AJ299999 1C cos115C2 skpA
l(1)G0058 AJ299998 1C cos115C2 skpA
l(1)G0389 AJ300001 1C cos115C2 skpA
EP(1)0369 AQ025326 1C1-3 BACR19J1 sdk
EP(1)1467 AQ025484 1C1-3 BACR19J1 EG:BACR19J1.3
l(1)G0115 AJ300002 1C1-3 BACR19J1 RpL22
l(1)G0422 AJ300003 1C BACR19J1 RpL22
l(1)G0451 AJ300004 1C BACR19J1 RpL22
EP(1)1600 AQ025529 1D1-2 BACR7A4
EP(1)1498 AQ073221 1D1-2 BACR7A4
l(1)G0132 AJ300005 1D BACR7A4 EG:BACR7A4.6
l(1)G0452 AJ300006 BACR7A4 EG:BACR7A4.5
l(1)G0296 AJ300008 1E BACR7A4 EG:BACR7A4.15
EP(1)1392 AQ025435 1E1-2 BACR7A4 anon-1Ed
EP(1)1594 AQ025523 1E3-4 BACR42I17
EP(1)0773 AQ025356 1E3-4 BACR42I17
EP(1)1543 AQ073253 1E3-4 BACR42I17
EP(1)1615 AQ025541 1E3-4 BACR42I17
EP(1)1443 AQ254774 1E3-4 BACR42I17
EP(1)1312 AQ073181 1E3-4 BACR42I17 EG:BAC42I17.10
EP(1)1090 AQ025382 1E3-4 cos33C11 EG:33C11.3
EP(1)1325 AQ073191 1E3-4 cos33C11 EG:33C11.3
EP(1)0964 AQ025366 1E3-4 cos33C11 EG:33C11.3
EP(1)1542 AQ073252 1F1-2 cos114D9
l(1)G0302 AJ300009 cos190E7
EP(1)1336 AQ073199 1F1-2 cos8D8 EG:8D8.1
l(1)G0105 AJ300010 1F1 cos8D8 EG:8D8.8
EP(1)1419 AQ025455 2A1-2 cos132E8
l(1)G0431 AJ300011 2A BACN32G11 EG:BACN32G11.5
l(1)G0044 AJ300013 2B1-4 cos80H7 EG:80H7.2
l(1)G0012 AJ300012 2A1-2 cos80H7 EG:80H7.2
l(1)G0130 AJ300015 2B1-4 cos80H7 sta
l(1)G0129 AJ300014 2B1-4 cos80H7 sta
l(1)G0448 AJ300016 2B1-4 cos80H7 sta
EP(1)1515 AQ073234 2B3-4 cos17A9 br
l(1)G0318 AJ300017 2B1-8 cos17A9 br
l(1)G0401 AJ300018 2B1-8 cos17A9 br
l(1)G0018 AJ300019 2B1-4 cos17A9 br
l(1)G0042 AJ300020 2B1-8 cos17A9 br
l(1)G0284 AJ300021 2B1-8 cos9D2 a6
AJ300022
l(1)G0051 AJ300023 2B cos131F2 EG:63B12.10
l(1)G0450 AJ300024 2B cos131F2 EG:63B12.10
l(1)G0301 AJ300025 2B cos131F2 EG:63B12.10
EP(1)1444 AQ025468 2B13-14 cos63B12 EG:63B12.4
EP(1)1190 AQ025400 2B13-14 cos63B12 EG:63B12.12
l(1)G0355 AJ300026 2C1-2 cos63B12 trr
l(1)G0192 AJ300027 2B cos63B12 arm
l(1)G0234 AJ300264 2B7-10 cos63B12 arm
l(1)G0410 AJ300028 cos86E4 arm
l(1)G0220 AJ300029 2B13-C2 cos86E4 BetweenEG:86E4.2 andEG:86E4.3
EP(1)1232 AQ254763 2B16-18 cos39E1
EP(1)0427 AQ025337 2C1-2 cos133E12 EG:133E12.3
l(1)G0014 AJ300031 2C1-2 cos133E12 east
l(1)G0500 AJ300032 2C1-2 cos133E12 east
l(1)G0100 AJ300033 cos133E12 Actn
l(1)G0077 AJ300034 2C cos22E5 Actn
EP(1)1193 AQ025401 2C7-8 cos22E5 usp
EP(1)1529 AQ073244 2C7-8 cos22E5 BetweenEG:22E5.11 and  EG:22E5.10
EP(1)1631 AQ025553 2C7-8 cos22E5 BetweenEG:22E5.11 and  EG:22E5.10
l(1)G0360 AJ300037 2C7-D4 cos67A9 BetweenEG:67A9.2 and  EG:67A9.1
l(1)G0310 AJ300038 2D cos67A9 BetweenEG:67A9.2 and  EG:67A9.1
l(1)G0066 AJ300039 2C cos67A9 BetweenEG:67A9.2 and  EG:67A9.1
l(1)G0333 AJ30040 cos67A9 BetweenEG:67A9.2 and  EG:67A9.1
l(1)G0158 AJ300035 2D1-2 cos67A9 EG:67A9.1
l(1)G0170 AJ300041 2D1-2 BACN25G24 csw
l(1)G0171 AJ300042 2C7-D2 BACN25G24 csw
l(1)G0458 AJ300043 2E cos87B1 ph-d
l(1)G0385 AJ300044 2E cos87B1 Pgd
EP(1)1460 AQ025479 2F1-2 cos103B4 BetweenVinc andpcx
EP(1)0426 AQ025336 2F1-2 cos30B8 pcx
l(1)G0144 AJ300045 2F cos25E8 EG:25E8.3
EP(1)1596 AQ025525 2F1-2 cos25E8 EG:25E8.2
EP(1)1125 AQ254758 2F4-5 cos25E8 EG:25E8.4
EP(1)1606 AQ025534 2F4-5 cos25E8 EG:25E8.4
l(1)G0226 AJ300046 2F cos25E8 EG:25E8.4
l(1)G0475 AJ300047 3A1-2 BACH48C10 phl
EP(1)1605 AQ025533 3A1-2 BACH48C10 ptr
EP(1)1174 AQ254760 3A1-2 BACH7M4 EG:BACH7M4.2
EP(1)1385 AQ025430 3A3-4 BACR25B3
EP(1)1447 AQ025470 3A3-4 BACR25B3 pcan
EP(1)1619 AQ025543 3A3-4 BACR25B3 pcan
l(1)G0023 AJ300049 3A1-4 BACR25B3
l(1)G0374 AJ300050 3A1-4 BACR25B3
EP(1)1160 AQ025397 3A3-4 BACR25B3
l(1)G0377 AJ300053 3A1-4 BACR25B3
l(1)G0211 AJ300052 3A1-4 BACR25B3
l(1)G0412 AJ300056 3A3-4 BACR25B3
l(1)G0271 AJ300055 3A3-4 BACR25B3
l(1)G0362 AJ300057 3A1-4 BACR25B3
l(1)G0251 AJ300060 3A3-4 BACR25B3 EG:BACR25B3.7
EP(1)0804 AQ025360 3A5-6 BACR25B3 egh
EP(1)1379 AQ073212 3B1-2 BACR7C10 sgg
EP(1)1576 AQ025509 3A8-9 BACR7C10 sgg
l(1)G0335 AJ300062 3B1-2 BACR7C10 sgg
l(1)G0263 AJ300061 3B1-2 BACR7C10 sgg
l(1)G0183 AJ300063 3A1-4 BACR7C10 sgg
l(1)G0055 AJ300064 3B1-2 BACR7C10 sgg
EP(1)1362 AQ025419 3B1-2 cos155E2 BetweenEG:155E2.5 and per
  • A list of the P-element insertions from the EP collection (Rørth et al. 1998) and the Göttingen screen (see Methods) in region 1A–3C of the X chromosome. For each element we show the EMBL-Bank accession no. of its flanking sequence, its cytological location, the corresponding cosmid or BAC (see Fig. 1A), and the gene predicted, on the basis of its position, to be mutant (see text).

  • EP(1)1600 lies ∼19 Kb from the 5′ end ofEG:34F3.1.

  • EP(1)1498 lies ∼30 Kb from the 5′ end ofEG:BACR7A4.6.

  • EP(1)1594 lies ∼11 Kb from the 5′ end ofEG:BACR42I17.2.

  • These four EP-elements lie between two genes: ∼5 Kb from the 5′ end of EG:BACR42I17.1 and ∼7 Kb from the 5′ end of EG:BACR42I17.2.

  • EP(1)1542 lies between the 3′ ends ofEG:114D9.1 and EG:114D9.2. It is ∼33 Kb from the 5′ end of EG:8D8.1.

  • l(1)G0302 lies at the 3′ end ofEG:190E7.1. It is ∼14 Kb from the 5′ end ofEG:114D9.2.

  • EP(1)1419 lies ∼19 Kb from the 5′ end ofEG:132E8.3.

  • l(1)G0284 contains two P-elements 40 Kb apart.

  • EP(1)1232 lies ∼11.5 Kb from the 5′ end ofEG:39E1.3.

  • EP(1)1385 lies ∼15 Kb from the 5′ end ofEG:BACH59J11.2.

  • This group of six P-elements plus oneEP-element lie ∼10 Kb from the 5′ end ofEG:BACR25B3.1.

  • l(1)G0362 lies ∼19 Kb from the 5′ end ofEG:BACR25B3.2

  • EP(1)0804 lies ∼7 Kb from the 5′ end ofegh.

  • This group of two EP-elements plus threeP-elements lie ∼16 Kb from the 5′ end ofsgg.

  • l(1)G0055 lies ∼12.5 Kb from the 5′ end of sgg.

This Article

  1. Genome Res. 11: 710-730

Preprint Server