A Comparative Genomics Approach to Prediction of New Members of Regulons

Table 8.

Escherichia coli TUs Predicted to Belong to the FNR Regulon

Operon Site sequence Position Score
Category I
b1674-b1673-b1672- TTAATTGATAACGATCAATGTT −218 20.04
 b1671-ydhU-b1669
b2503 TTGTTTGATATATATCAATTGG −145 20.26
b2504 CCAATTGATATATATCAAACAA −229 20.26
cydAB GGAATTGATATTTATCAATGTA −350 21.30
TAAATTGTTCTCGATCAAATTG −298 19.10
narXL CAATTTGATGTAAATCAAACGA −283 20.38
ATCATTGATATTTATCATTACC −245 16.41
ung ATCTTTGATTTAAATCAATAAA −202 20.93
TTTATTGTTTTACATCAACTTA −149 14.99
yciCB TAATGTGATTTAAATCAATTTT −212 20.88
yciD AAAATTGATTTAAATCACATTA −167 20.88
yehDCBA TAATTTGTTTTAAATCAATAAA −124 20.17
yfiD TTTATTGATTTAAATCAAAGAT −125 20.93
TAAGTTGATGTAAAACAATAAA −178 14.99
  • Listed are predictions from category I.

This Article

  1. Genome Res. 11: 566-584

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