A Comparative Genomics Approach to Prediction of New Members of Regulons

Table 4.

Training Set TU in Escherichia coli Regulated by FNR

Operon Site sequence Position Score
ansB TAAATTGTTTAACGTCAAATTT −75 20.55
dmsA CCCTTTGATACCGAACAATAAT −276 12.0
fnr AAAATTGACAAATATCAATTAC −37 23.67
focA AGATATGATCTATATCAATTTC −78 21.10
narGHJI ACTCTTGATCGTTATCAATTCC −110 17.57
narK GGTAATGATAAATATCAATGAT −116 16.41
TCGTTTGATTTACATCAAATTG −78 20.38
ndh AAACTTGATTAACATCAATTTT −155 25.84
nirBDCcysG GAATTTGATTTACATCAATAAG −77 23.12
tdcABC TTTTTTGACAAAAATCAGGGTT −187 14.03
  • This table contains top scoring site for all nine TUs, plus any additional sites with scores above 14.

This Article

  1. Genome Res. 11: 566-584

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