Table 5.
Nomenclature and Frequencies for Y-Chromosomal SNP Haplotypes
| Haplotype frequency (%) | ||||||||||||||||||
| Locus | Population | |||||||||||||||||
| Haplotype | Tat (T/C) | M9 (G/C) | SRY10831 (G/A) | M17 (del G) | M12 (G/T) | 92R7 (C/T) | Eastern Finns (n = 66) | Western Finns (n = 47) | Northern Finns (n = 14) | All Finns (n = 127) | Inari Saami (n = 46) | Kola Saami (n = 29) | Skolt Saami (n = 23) | All Saami (n = 98) | Karelians (n = 30) | Mansi (n = 19) | Khantyi (n = 21) | All Ob-Ugric (n = 40) |
| H2+ | T | C | G | G | T | C | 0 | 0 | 0 | 0 | 0 | 14 | 0 | 4.1 | 0 | 0 | 0 | 0 |
| H2 | T | C | G | G | G | C | 15 | 32 | 0 | 19 | 34 | 17 | 52 | 33 | 33 | 0 | 0 | 0 |
| H26 | T | G | G | G | G | C | 1.6 | 0 | 0 | 0.8 | 0 | 0 | 0 | 0 | 0 | 79 | 33 | 55 |
| H16 | C | G | G | G | G | C | 84 | 64 | 93 | 77 | 61 | 55 | 44 | 55 | 43 | 16 | 57 | 38 |
| H1 | T | G | G | G | G | T | 0 | 0 | 0 | 0 | 0 | 3.4 | 4.3 | 2.0 | 3.0 | 0 | 0 | 0 |
| H3+ | T | G | A | T | G | T | 0 | 4.3 | 7.1 | 2.4 | 4.5 | 10 | 0 | 5.2 | 20 | 5.3 | 9.5 | 7.5 |
| Nucleotide diversity | 0.087 | 0.194 | 0.187 | 0.202 | 0.305 | 0.187 | 0.339 | 0.117 | 0.192 | |||||||||
| Mean pairwise difference | 0.53 | 1.16 | 0.57 | 1.21 | 1.83 | 1.12 | 2.04 | 0.70 | 1.15 | |||||||||
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↵The nomenclature used in this study is according to published literature (Jobling and Tyler-Smith 1997; Tyler-Smith 1999).
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↵The substitutions from ancestral state are shown bolded. The A-allele at SRY 10831 site is revertant on an M9-G background (Hammer et al. 1998).
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↵Detection from complementary strand.
