Table 1.
Number and Distribution of Genes and Families for Three Eukaryotic Genomes
| Genome/Cutoff | No. of genes | No. of families | Genes in families (paranome) | ||||
| total no. | mean | median | maximum | skewness | |||
| C. elegans/10−20 | 18890 | 1457 | 10256 | 7.0 | 3 | 1054 | 30.0 |
| C. elegans/10−30 | 18890 | 1522 | 9060 | 6.0 | 2 | 382 | 13.6 |
| C. elegans/10−40 | 18890 | 1505 | 7960 | 5.3 | 2 | 218 | 11.1 |
| C. elegans/10−50 | 18890 | 1520 | 7077 | 4.7 | 2 | 156 | 10.3 |
| C. elegans/10−60 | 18890 | 1472 | 6257 | 4.3 | 2 | 109 | 7.9 |
| Drosophila/10−50 | 12860 | 824 | 2967 | 3.6 | 2 | 35 | 4.1 |
| Yeast/10−50 | 5786 | 503 | 1440 | 2.9 | 2 | 44 | 8.2 |
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(Cutoff) parameter in blast algorithm that corresponds to strictness of search; the smaller the value, the stricter the search (less matches). (No. of families) the total number of families (>1 gene per family) in the data set. (Genes in families) total number of genes in all families. Mean, median, maximum, and skewness are computed for family sizes (number of genes).
