Sequence and Analysis of Chromosome I of the Amitochondriate Intracellular Parasite Encephalitozoon cuniculi (Microspora)

Table 2.

Classification of E. cuniculi Genes According to Clusters of Orthologous Groups of Proteins (COGs)

CDS# Gene description %ID CDS# Gene description %ID
Translation, ribosomal structure and biogenesis Cell motility and secretion
 0016 Ribosomal protein L8 68  0031 Actin 79
 0054 Elongation factor 2 72  0041 Myosin heavy chain 43
 0076 Ribosomal protein S12 47  0108 Dynamin 52
 0093 Nucleolar protein p120 51 Inorganic ion transport and metabolism
 0123 snoRNP 51  0118 Putative frataxin 59
Transcription Signal transduction mechanisms
 0028 Clipper/cleavage and  0048 Serine/threonine kinase 61
   polyadenylation factor 71 Energy metabolism and conversion
 0032 Transcription factor 69  0009 Fructose bi-phosphate
 0035 RNA polymerase II  aldolase 54
 mediator 54  0064 Alpha, alpha-trehalose- 65
 0039 RNA binding protein 57  phosphate synthase
 0045 DNA-directed RNA pol I 58  0071 Trehalose-6-P phosphatase 39
 0051 Transcription factor IIH 47  0081 Aldose reductase 55
 0068 RNA binding protein 49 Carbohydrate transport and metabolism
 0080 TBP-1 48  0050 N-acetylglucosamine-
 0120 TFIID subunit 61  phosphate mutase 55
DNA replication, recombination Amino acid transport and metabolism
  and repair  0004 Serine hydroxy methyl
 0020 Helicase 60  transferase 67
 0030 DNA repair protein 41  0129 Serine hydroxy methyl transferase 67
 0091 DNA repair helicase 68
 0103 Chromosome assembly 41 Nucleotide transport and metabolism
   protein  0002 Dihydrofolate reductase 52
 0105 Replication factor C 47  0003 Thymidylate synthase 73
Cell division and chromosome partitioning  0058 Thymidine kinase 52
 0022 Putative cell division 50  0109 Guanylate kinase 60
 0088 Putative microtubule  0130 Thymidylate synthase 73
   associated protein 42  0131 Dihydrofolate reductase 52
 0110 Cell division cycle Coenzyme metabolism
 protein 48 homolog 77  0036 NIFU protein 83
 0119 Cell division cycle 42 52 Lipid metabolism
 0124 Septin homolog protein 47  0085 CDP-diacylglycerol–
Posttranslational modification, protein turnover,  inositol 3 phosphatidyl
 chaperones  transferase 48
 0001 Aminopeptidase 47 General function prediction only
 0042 DNAJ like-protein 52  0005 ABC transporter 46
 0078 Ubiquitin-conjugating  0023 Cell differentiation 51
   enzyme 56  0038 Golgi protein 57
 0086 Ubiquitin-conjugating  0059 Zinc finger protein 46
   enzyme 59  0062 Zinc finger protein 44
 0100 Serine protease 49  0067 Zinc finger protein 72
 0132 Aminopeptidase 47  0116 Coatomer protein 48
Cell envelope biogenesis, outer membrane  0117 WD-repeat protein 45
 0126 Chitin synthase 65  0128 ABC transporter 46

  • Gene numerotation is identical to that shown in Fig. 3.

  • ID represents the percentage of identity relative to the most relevant database find.

This Article

  1. Genome Res. 11: 198-207

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