Genetic and Physical Locations of Rice Chromosomal Arm-Specific BAC Clones
| Chromosomal arm | RFLP marker | Genetic position (cM) | Relative genetic position | Selected BAC | Physical location | n |
| 1S | C146 | 12.3 | 6.77 | a0059H02 | 5.87 ± 0.66 | 10 |
| 1L | G370 | 140.8 | 77.49 | a0026F14 | 78.64 ± 0.83 | 10 |
| 2S | S10889 | 11.5 | 7.43 | a0095P12 | 8.00 ± 0.81 | 10 |
| 2L | C747 | 107.7 | 69.62 | a0064F10 | 76.11 ± 2.22 | 10 |
| 3S | C725 | 13.3 | 7.95 | a0076A03 | 5.95 ± 0.46 | 10 |
| 3L | G1015 | 142.8 | 85.41 | a0007K12 | 86.39 ± 1.40 | 10 |
| 4S | C820 | 17.4 | 13.44 | a0065E01 | 15.85 ± 0.87 | 10 |
| 4L | G177 | 111.2–111.7 | 85.02–86.10 | a0080P07 | 85.24 ± 1.94 | 10 |
| 5S | R3166 | 18.8 | 15.73 | a0096I15 | 6.90 ± 0.90 | 10 |
| 5L | C1230 | 119.5 | 100 | a0036L10 | 97.89 ± 0.25 | 10 |
| 6S | G200 | 33.5 | 26.80 | a0089N04 | 23.79 ± 1.70 | 10 |
| 6L | R1167 | 123.1 | 98.48 | a0088F21 | 100 ± 0.00 | 10 |
| 7S | C1057 | 11.0 | 9.40 | a0078O19 | 7.87 ± 1.27 | 10 |
| 7L | R1245 | 83.0 | 70.94 | a0085M21 | 78.73 ± 1.25 | 10 |
| 8S | C166 | 26.2 | 22.04 | a0005O22 | 11.33 ± 1.70 | 10 |
| 8L | R1963 | 118.1 | 99.34 | a0085C09 | 82.61 ± 2.05 | 10 |
| 9S | G36 | 0.8 | 0.83 | a0052I16 | 9.10 ± 0.78 | 10 |
| 9L | G293 | 94.7 | 98.54 | a0061K19 | 97.89 ± 2.50 | 10 |
| 10S | S10620 | 1.2 | 1.43 | a0045D16 | 1.54 ± 0.12 | 8 |
| 10L | C405 | 83.7 | 100 | a0056G17 | 100 ± 0.00 | 8 |
| 11S | R2918 | 10.2 | 8.60 | a0040B10 | 9.59 ± 0.73 | 10 |
| 11L | C1172 | 79.9 | 67.37 | a0071H11 | 67.57 ± 0.54 | 10 |
| 12S | R1957 | 10.1 | 9.17 | a0095C23 | 5.98 ± 1.25 | 10 |
| 12L | C901 | 110.1 | 100 | a0011E08 | 100 ± 0.00 | 10 |
-
↵Relative genetic position is calculated as (cmX ÷ cmT) × 100, where cmX = the cM value of the RFLP marker on the linkage map, cmT = the total cM value of the same linkage map (Harushima et al. 1998). For example, C146 was mapped to 12.3 cM on linkage map 1 that totals 181.7 cM. The relative genetic position of C146 is (12.3/181.7) × 100 = 6.77.
-
↵Physical location is calculated as (S ÷ T) × 100, where S = the distance (in μm) from the FISH hybridization site to the end of the short arm of the chromosome, and T = the total length of the chromosome in μm.
-
↵The number of measurements.
