Evolutionary History of Cer Elements and Their Impact on the C. elegans Genome

Table 2.

List of All Known Cer LTR Retrotransposons in the SequencedC. elegans(N2) Genome

Element family Genomic clone Element type Chromosome
Cer1 f44e2/par3 full III
Cer1 c25a11 ltr X
Cer1 c24h10 ltr X
Cer1 y39e4b ltr III
Cer2 r03d7 full II
Cer2 f53e10 ltr V
Cer2-1 k08d10 frag IV
Cer2-1 f49f1 frag IV
Cer2-1 w04a8 ltr I
Cer3 f58h7 full IV
Cer3-1 y37h2a frag V
Cer3-1 y76b12c ltr IV
Cer3-1 y39e4a ltr III
Cer3-1 k09h9 ltr I
Cer3-1 y39b6a ltr V
Cer3-1 e02h9 ltr III
Cer3-1 y105e8e ltr I
Cer3-1 y23h5b ltr I
Cer3-1 y77e11a ltr IV
Cer3-1 y75b8a ltr III
Cer3-1 t09a5 ltr II
Cer4 f15g10/t23e7 full X
Cer5 t03f1 full I
Cer5 f39b3 frag X
Cer5 k02a2 frag II
Cer5 c31e10 frag X
Cer5 f22g12 frag I
Cer5 r01h5 ltr X
Cer5 y27f2a ltr II
Cer5 t27f6 ltr I
Cer5 c25b8 ltr X
Cer5 f49c8 ltr IV
Cer5 f22e5 ltr II
Cer5 w04g5 ltr I
Cer5 y111b2g ltr III
Cer5 f56h6 ltr I
Cer6 e03a3 full III
Cer6 y102a5c frag V
Cer6 y53f4a ltr II
Cer6 y73f8a ltr IV
Cer6 zc487 ltr V
Cer6 c55a1 ltr V
Cer7 zc132 full V
Cer7 h08m01 ltr IV
Cer8 zk262/zk228 full V
Cer8 c03a7 full V
Cer8 c33e10 ltr X
Cer9 y43f4a full III
Cer9 w09b7/f07b7 full V
Cer9 f07b7/k06c4 full V
Cer9 k09e3 frag X
Cer9 c33c12/c40a11 frag II
Cer9 c07d8/c56g3 frag X
Cer9 b0047 ltr II
Cer9 c13b9 ltr III
Cer9 y59a8b ltr V
Cer9 y57a10a ltr II
Cer9 f15a2 ltr X
Cer10 y81b9a/c35b8 full X
Cer10 t23b12/zk994 frag V
Cer10 t12b5 ltr III
Cer10 y73f8a ltr IV
Cer10 t22b2 ltr X
Cer11 t14g12 frag X
Cer12 f21d9/f55c9 full V
Cer12 k07c6 ltr V
Cer12 w03g1 ltr IV
Cer12 y51h4a ltr IV
Cer12 c01b9 ltr II
Cer12 c09g1 ltr X
Cer12 k04c1 ltr X
Cer12 c44b12 ltr IV
Cer12 y94h6a ltr IV
Cer12 c04g6 ltr II
Cer12 y60a3a ltr V
Cer12-1 zc15 frag V
Cer12-1 f41g4 frag X
Cer12-1 k08d12 ltr IV
Cer12-1 f58f6 ltr IV
Cer13 y75d11a/w03h1 full X
Cer13 c09b9 frag IV
Cer14 y105c5b frag IV
Cer15 y102a5d/f40d4 full V
Cer15 t11f9 frag V
Cer15 y105e8a ltr I
Cer15-1 c52e2/c16c4 full II
Cer15-1 f19b2 frag V
Cer15-1 y40h7a frag IV
Cer15-1 y45f10c ltr IV
Cer16 r13d11 full V
Cer16 f47d2 ltr V
Cer16 f28d9 ltr I
Cer16 f36a4 ltr IV
Cer16-1 y71h2am ltr III
Cer16-1 f38c2 ltr IV
Cer16-1 f11a6 ltr I
Cer16-1 y32h12a ltr III
Cer16-1 f47b7 ltr X
Cer16-1 f20b4 ltr X
Cer16-2 f20b4/6r55 full X
Cer16-2 zk1025/c27c7 frag I
Cer16-2 t16g12 frag III
Cer16-2 t05a1 frag IV
Cer16-2 zc247 ltr I
Cer17 r52 full II
Cer19 r09h3/c36c9 full X
Cer 19 c38d9 frag V
Cer 19 y7a5a ltr X
Cer 19 f15d4 frag II
Cer 19 t06a10 frag IV
Cer 19 d1022 ltr II
Cer 19 f35h10 ltr IV
Cer 19 zk1055 ltr V
Cer 19 c35d6 ltr IV
Cer 19 t08g3 ltr V
Cer 19 zk643 ltr III
Cer 20 y87g2a full I
Cer 20 k01d12 full V
Cer 20 f41b5 full V
Cer 20 y50e8a frag V
Cer 20 t10g3 ltr V
Cer 20 t28d6 ltr III
Cer 20 c32b5 ltr II
Cer 20 y94h6a ltr IV

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  1. Genome Res. 11: 2066-2074

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