Table 1.
Groups of Collinear Segment Pairs Between Rice and Arabidopsis
| Group | Interruptions | Rice | Putative Function | Arabidopsis | |||||
| BAC | ORF | BAC | ORF | ||||||
| 1 | 3 | AP002882[1] | BAB39868.1 | putative receptor protein | AC011914_F14K14[1] | F14K14.4/AT1G68749 | |||
| (∼41 kb) | BAB39876.1 | putative phosphoenolpyruvate carboxylase | (∼21 kb) | F14K14.1/AT1G68750 | |||||
| BAB39877.1 | unknown protein | F14K14.18/AT1G68780 | |||||||
| 2 | 2 | AP003338[1] | BAB39434.1 | receptor serine/threonine kinase PR5K | AB005247_MXA21[5] | MXA21_170/AT5G38280 | |||
| (∼36 kb) | BAB39435.1 | receptor serine/threonine protein kinase-like | (∼19 kb) | MXA21_150/AT5G38260 | |||||
| BAB39439.1 | receptor serine/threonine protein kinase-like | MXA21_130/AT5G38240 | |||||||
| 3 | 3 | AP003338[1] | BAB39434.1 | receptor serine/threonine kinase PR5K, putative | AC007152_F1O19[1] | F1O19.1/AT1G66930 | |||
| (∼36 kb) | BAB39435.1 | hypothetical protein | (∼30 kb) | F1O19.6/AT1G66980 | |||||
| BAB39439.1 | hypothetical protein | F1O19_4/AT1G67000 | |||||||
| 4 | 0 | AP003233[1] | BAB55519.1 | putative protein | AB012241_K18L3[5] | K18L3_30/AT5G37870 | |||
| (∼10 kb) | BAB55521.1 | putative protein | (∼29 kb) | K18L3_70/AT5G37910 | |||||
| BAB55522.1 | putative protein | K18L3_90/AT5G37930 | |||||||
| 5 | 0 | AP002483[1] | BAB16455.1 | putative protein | AL137189_F7J8[5] | F7J8_200/AT5G01220 | |||
| (∼23 kb) | BAB16456.1 | putative protein | (∼29 kb) | F7J8_180/AT5G01200 | |||||
| BAB16458.1 | oligopeptide transporter-like protein | F7J8_160/AT5G01180 | |||||||
| 6 | 0 | AP003311[1] | BAB40110.1 | putative protein | AL137189_F7J8[5] | F7J8_200/AT5G01220 | |||
| (∼23 kb) | BAB40111.1 | putative protein | (∼29 kb) | F7J8_180/AT5G01200 | |||||
| BAB40113.1 | oligopeptide transporter-like protein | F7J8_160/AT5G01180 | |||||||
| 7 | 6 | AP002540[1] | BAB43990.1 | ubiquitin-protein ligase E3-alpha-like protein | AL162874_T1E22[5] | T1E22_60/AT5G02300 | |||
| (∼103 kb) | BAB43991.1 | eceriferum3 (CEP3) | (∼37 kb) | T1E22_70/AT5G02310 | |||||
| BAB44010.1 | metallothionein 2b | T1E22_140/AT5G02380 | |||||||
| BAB44011.1 | putative protein | T1E22_150/AT5G02390 | |||||||
| 8 | 7 | AP002522[1] | BAB03613.1 | putative protein | AL162971_T22P11[5] | T22P11_70/AT5G02480 | |||
| (∼20 kb) | BAB03618.1 | putative protein | (∼29 kb) | T22P11_130/AT5G02540 | |||||
| BAB03624.1 | putative protein | T22P11_160/AT5G02570 | |||||||
| 9 | 4 | AP002522[1] | BAB03613.1 | unknown protein | AC004684_F13M22[2] | F13M22.7/AT2G37570 | |||
| (∼38 kb) | BAB03618.1 | putative oxidoreductase | (∼12 kb) | F13M22.4/AT2G37540 | |||||
| BAB03619.1 | hypothetical protein | F13M22.3/AT2G37530 | |||||||
| 10 | 3 | AP003045[1] | BAB44058.1 | hypothetical protein | AC009326_MZB10[3] | MZB10.14/AT3G09110 | |||
| (∼34 kb) | BAB44062.1 | hypothetical protein | (∼8 kb) | MZB10.15/AT3G09120 | |||||
| BAB44065.1 | hypothetical protein | MZB10.17/AT3G09140 | |||||||
| 11 | 1 | AP003045[1] | BAB44060.1 | putative protein | AL137189_F7J8[5] | F7J8_100/AT5G01120 | |||
| (∼23 kb) | BAB44062.1 | putative protein | (∼9 kb) | F7J8_110/AT5G01130 | |||||
| BAB44065.1 | putative protein | F7J8_130/AT5G01150 | |||||||
| 12 | 0 | AP002523[1] | BAB17059.1 | putative glucosyl transferase | AC006282_F13K3[2] | F13K3.15/AT2G36750 | |||
| (∼2 kb) | BAB17060.1 | putative glucosyl transferase | (∼9 kb) | F13K3.17/AT2G36770 | |||||
| BAB17061.1 | putative glucosyl transferase | F13K3.18/AT2G36780 | |||||||
| 13 | 4 | AP002524[1] | BAB07963.1 | putative protein | AL022537_F4D112[4] | F4D11.180/AT4G32620 | |||
| (∼26 kb) | BAB07965.1 | putative protein | (∼13 kb) | F4D11.190/AT4G32610 | |||||
| BAB07971.1 | putative protein | F4D11.200/AT4G32600 | |||||||
| 14 | 4 | AP002482[1] | BAA99514.1 | hypothetical protein | AL078620_F23K16[4] | F23K16_50/AT4G39420 | |||
| (∼19 kb) | BAA99515.1 | hypothetical protein | (∼27 kb) | F23K16_60/AT4G39430 | |||||
| BAA99516.1 | hypothetical protein | F23K16_80/AT4G39450 | |||||||
| BAA99522.1 | cytochrome P450-like protein | F23K16_110/AT4G39480 | |||||||
| BAA99523.1 | cytochrome P450-like protein | F23K16_120/AT4G39490 | |||||||
| 15 | 0 | AP002743[1] | BAA99424.1 | phytochrome-associated protein PAP2 | AL07840_F19B15[4] | F19B15.110/AT4G29080 | |||
| (∼11 kb) | BAA99425.1 | hexokinase | (∼57 kb) | F19B15.160/AT4G29130 | |||||
| BAA99426.1 | hypothetical protein | F19B15.180/AT4G29150 | |||||||
-
For each group, GenBank accession numbers for rice andArabidopsis BAC are followed by their chromosome location and approximate linkage size. Putative protein function information was retrieved from the MATDB database. Interruptions refer to the number of rice genes having Arabidopsis homologs that do not fall into the collinear region. The complete table can be accessed athttp://www.genome.org.
