Comparative Genomics Between Rice and Arabidopsis Shows Scant Collinearity in Gene Order

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Figure 1.
Figure 1.

Clustering of predicted proteins on rice BACs to homologs on different chromosomes of Arabidopsis. Each row is for a rice BAC, and the size of starburst indicates the number of rice proteins on the BAC showing homology with Arabidopsis proteins on a specific chromosome. The number after the starburst is the total number of hits. Following are the number of putative proteins on each BAC. Because of removing overlapping genes on neighboring clones, some of those BACs contain fewer proteins; these are indicated in the following list by an asterisk. The actual number is indicated following the original one. On Chromosome 1: AP002818(25), AP002882(32), AP003338(17), *AP002867(25)(14), *AP002747(30)(18), AP002541(31), *AP002868(23)(21),AP002487(11), AP003046(24), AP003233(27), AP002909(21), AP002538(20),AP002526(27), AP002913(24), *AP002483(26)(9), AP003311(30),AP002872(32), AP002540(34), *AP002522(30)(15), AP003045(32), *AP002539(36)(9), AP002521(31), AP002912(29), AP002523(23), *AP002524(27)(17), AP003118(22), AP003047(23), *AP002484(25)(21), *AP002486(28)(25), *AP002816(24)(7), *AP002836(21)(18), *AP002743(26)(22), *AP002746(34)(21), AP002537(29), AP003244(19),AP003105(27), AP001551(31), *AP002093(27)(7), *AP002092(33)(32), *AP003104(32)(15), AP001633(36), AP002094(25), *AP001800(27)(13), *AP002835(21)(16), AP002902(27), AP001859(23), AP001550(26), *AP002481(26)(19), AP001539(29), *AP002855(23)(19), AP003210(21),AP003074(34), AP002865(28), *AP001278(30)(23), *AP000816(12)(10), *AP000492(33)(9), AP000570(33), *AP002525(25)(21), *AP002817(24)(15), *AP001366(27)(24), AP001383(27), *AP001080(25)(21), *AP000969(23)(17), *AP001073(29)(18), AP001081(31), *AP000837(18)(12), AP000836(24),AP001072(21), AP000815(25), AP003018(25), AP003020(26), AP002070(30), *AP002480(28)(26), AP002482(34), AP002820(12), AP003140(30),AP003578(20), AP002881(15), AP002871(27), AP002953(23), AP002971(25),AP002869(35), AP003143(20), AP002870(21), AP003021(31), AP002914(19),AP002968(21), AP003144(18), AP003054(16), AP003075(18), AP002908(24),AP003048(21), AP002844(27), AP002866(34), AP002897(21), AP002843(27),AP002819(25), AP002744(36), AP002839(32), AP002910(33), AP003053(14),AP003023(25), AP002901(33), AP002899(28), AP002972(22), AP003076(40),AP003106(29), AP003073(33). On Chromosome 2: AP000366(3), AP000367(20). On Chromosome 3: AP000615(28). On Chromosome 6: *AP001129(35)(28),AP000616(28), AP001552(25), AP001389(27), AP001168(27), *AP000391(27)(24), AP000559(28), AP002542(32), AP000399(32),AB026295(35), AB023482(32), AP002071(27), AP002069(29), AP003044(26). On Chromosome 8: AP000364(25).

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  1. Genome Res. 11: 2020-2026

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