Mouse BAC Ends Quality Assessment and Sequence Analyses

(Downloading may take up to 30 seconds. If the slide opens in your browser, select File -> Save As to save it.)

Click on image to view larger version.

Figure 2.
Figure 2.

Mouse repeats by RepeatMasker. The repeat contents were analyzed by RepeatMasker for 277,490 (129 Mb) RPCI-23 mBESs and 175,647 (90 Mb) RPCI-24 mBESs, 258-Mb mouse phase 1–3 sequences, 50,000 (24 Mb) end sequences of a 10-kb sheared DNA plasmid library from dbGSS, and 50,000 (36 Mb) mouse whole-genome shotgun (WGS) reads randomly chosen from the TraceArchive site. mBESs contained a significantly higher fraction of LINE (nearly all were L1); and sheared DNA plasmid ends and WGS reads contained a higher fraction of satellite repeats. DNA = MER1_type + MER2_type; LINE = LINE1 (L1) + LINE2 + L3/CR1; LTR = MaLRs + ERVL + ERV classI + ERV classII; SINE = B1s + B2 − B4 + IDs + MIRs.

This Article

  1. Published in Advance September 20, 2001, doi: 10.1101/gr.179201 Genome Res. 11: 1736-1745

Preprint Server



Current Issue

  1. January 2026, 36 (1)
  1. Current Issue
  1. Alert me to new issues of Genome Research