Table 3.
SSAHA Searches for Different Values of k
| k | 90% | 95% | 100% | ||||
| Thash | Tsearch | Thash | Tsearch | Thash | Tsearch | ||
| 10 | 824.0s | 102.5s | 842.4s | 128.8s | 868.5s | 389.5s | |
| 11 | 798.3s | 26.3s | 810.5s | 36.1s | 808.8s | 199.1s | |
| 12 | 952.2s | 7.3s | 969.9s | 11.0s | 961.2s | 119.0s | |
| 13 | 850.8s | 2.2s | 859.1s | 4.5s | 851.4s | 78.7s | |
| 14 | 914.1s | 0.9s | 932.0s | 2.5s | 927.1s | 51.6s | |
| 15 | 996.0s | 0.1s | 1015.5s | 1.7s | 999.2s | 35.4s | |
