Table 1.
GF-Type L1 Sequences Used in This Study
| L1 name | Accession # | GI # | Database | Coordinates | Intact ORF1/ORF2 | # full length monomers | # truncated monomers | % identity with body consensus | Active w/wo CMV promoter |
| GF13 | AF146793 | 7684609 | nr | 114636–121199 | Y/Y | 2.2 | 2 | 99.5 | Y/N? |
| GF21 | AC021631 | 13310926 | htgs/nr | 68991–62229 | Y/Y | 3.3 | 2 | 99.5 | Y/Y |
| GF23 | AF229843 | 6862583 | nr | 42031–48206 | N/Y | 0.7 | 1 | 98.6 | |
| GF26 | AC002406 | 2981248 | nr | 19967–26229 | N/N | 1.2 | 1 | 96.1 | |
| GF27 | AC026767 | 12643015 | htgs/nr | 118223–110609 | N/Y | 2.2 | 2 | 99.4 | N/N? |
| GF36 | AC003996 | 2772523 | nr | 20312–27252 | Y/N | 1.4 | 3 | 96 | |
| GF43 | AL450393 | 11876100 | htgs | 7656–13977 | Y/Y | 1.1 | 2 | 99.6 | |
| GF46 | AL049866 | 7630118 | nr | 22185–15089 | Y/N | 5.1 | 1 | 99.3 | |
| GF56 | AC058786 | 11120825 | nr | 200048–206662 | Y/N | 2.4 | 2 | 99.6 | |
| GF62 | AC068252 | 13357510 | htgs | 161311–154202 | Y/Y | 6.1 | 1 | 99.6 | Y/Y |
| GF68 | AC006508 | 4454569 | nr | 167020–160414 | N/N | 2.2 | 2 | 97.7 | |
| GF71 | AC079221 | 10122065 | htgs | 58136–64915 | Y/N | 1.1 | 1 | 98.4 | |
| GF78 | AC007978 | 12000475 | nr | 42762–49862 | Y/N | 5.1 | 1 | 99.4 | |
| GF82 | AC083912 | 10697433 | htgs | 925–7430 | Y/Y | 2 | 2 | 99.2 | |
| GF84 | AC087134 | 11610860 | htgs | 179278–172998 | N/N | 1.7 | 0 | 92.6 | |
| GF251 | AF259071 | 8571430 | nr | 61240–55080 | Y/N | 1.1 | 0 | 96.4 | |
| GF253 | AF259073 | 8575573 | nr | 6526–256 | Y/N | 1.7 | 0 | 93.4 |
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↵Database refers to the non-redundant or high-throughput genomic sequence databases of GenBank.
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↵Coordinates are the first and last nucleotides in the GenBank record delimiting the L1.
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↵See Figure 1B for description of monomer structure.
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↵Identity with GF consensus sequence beginning 250 bp upstream of the start of ORF1.
