A SNP Resource for Human Chromosome 22: Extracting Dense Clusters of SNPs From the Genomic Sequence

Table 2.

Verification of Polymorphisms

Lower allele frequency (P) PCRRFLP Invader Total
Number of variants tested 415 90 505
Number of variants with lower allele frequency 0.4 ≤ P ≤ 0.5 77 (19%) 15 (17%) 92 (18%)
0.3 ≤ P < 0.4 83 (20%) 23 (25%) 106 (21%)
0.2 ≤ P < 0.3 83 (20%) 9 (10%) 92 (18%)
0.1 ≤ P < −0.2 83 (20%) 14 (16%) 97 (19%)
0.0 ≤ P < 0.1 47 (11%) 22 (24%) 69 (14%)
Number not polymorphic 0 42 (10%) 7 (8%) 49 (10%)
  • Used 20 individuals for verification.

  • Used 90 individuals for verification.

This Article

  1. Genome Res. 11: 170-178

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