Assessing Clusters and Motifs from Gene Expression Data

Table 1.

MCM1 Motif Refinement

Motif Consensus sequence
MCM1-initial C C C N A W W A G G
MCM1-secondary W C C N N W T T A G G M A M
MCM1-short W C C Y N W T T A G G A A A
MCM1-long W T W W C C Y N W T T A G G A A A W N
ECB-SCPD T T W C C C N W T T A G G A A A
ECB-T W T T W C C Y Y W T T N G G N W A WW
  • Weight matrix consensus sequences in IUPAC codes. The MCM1-long and ECB-T motifs have several, mostly variable, extra elements.

  • From SCPD (Zhu and Zhang 1999).

  • Tavazoie et al. (1999) and this work.

This Article

  1. Genome Res. 11: 112-123

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