An Annotated Catalog of Inverted Repeats of Caenorhabditis elegans Chromosomes III and X, with Observations Concerning Odd/Even Biases and Conserved Motifs

Table 4.

Perfect, Loopless, Intergenic Inverted Repeats Size 25–60 bp with GTGAC Motif-Chromosome III

Starting bp Size (bp) of inverted repeat Between these two genes on direct strand (protein ID from GenBank) Between these two genes on indirect strand (protein ID from GenBank)
773,376 46 3844610 (unknown) 2088857 (unknown) 2088860 (unknown) 2088861 (unknown)
7,671,060 46 388605 (homology with vitronectin receptor α subunit) 388597 (unknown) 388598 (unknown) 3878108 (similar sugar transporter)
9,333,805 46 3879514 (unknown) 3874820 (probable rab gap domain) 3874822 (similar UMP synthetase) 3878636 (similar cAMP dependent protein kinase)
12,071,592 46 3880555 (similar serine threonine kinase) 3878440 (similar central domain tyrosinase) 3880554 (unknown) 3878436 (unknown)
12,071,593 44 3880555 (similar serine threonine kinase) 3878440 (similar central domain tyrosinase) 3880554 (unknown) 3878436 (unknown)
4,281,164 38 485148 (unknown) 485147 (unknown) 485149 (unknown) 488150 (unknown)
4,237,391 30 485157 (similar tyrosine kinase receptor) 746490 (similar yeast SSDI protein) 485160 (unknown) 485159 (unknown)
10,201,272 30 3925251 (unknown) 3880324 (unknown) 3925249 (similar zinc finger C2H2 type) 3880322 (unknown)
2,479,727 28 3874994 (similar pyridine nucleotide di-sulphide oxide reductase class I) 3874288 (unknown) 3880235 (similar family I of G-protein-coupled receptors) 3880236 (similar cyclophilin-like NK tumor recognition)
8,317,436 26 3873800 (similar TPR domain) 3877610 (similar domain to disheveled, Egl-10, Pleckstrin) 3873792 (putative aspartyl tRNA synthetase) 3877607 (similar super oxide dismutase)
10,461,309 25 3880323 (unknown) 3880319 (similar ankrin repeat) 3880324 (unknown) 3880320 (similar α tubulin subunit)
10,325,368 25 3925251 (unknown) 3880324 (unknown) 3925249 (similar zinc finger C2H2type) 3880322 (unknown)
  • Perfect loopless inverted repeats size 25–60 bp with GTGAC motif found in the intergenic regions of Caenorhabditis chromosome III.

This Article

  1. Genome Res. 10: 1381-1392

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