Comparative Maps of Human 19p13.3 and Mouse Chromosome 10 Allow Identification of Sequences at Evolutionary Breakpoints

Table 1.

Gene and Marker Positions in 19p13.3 Region Homologous to Mouse Chromosome 10

Gene Genomic clone
human gene/marker gene/marker accession mouse orthologue location LLNL clone ID clone name finished accession
SCK AB001451 Shc2 450 R34739 LLNL-R_310G3 AC006124
CDC34 L22005 Cdc34 540 R27157 LLNL-R_231G5
R31903 LLNL-R_281B11
GZMM L23134 Lmet1 550 R31903 LLNL-R_281B11
BSG D45131 Bsg 590 F18382 LLNL-F_140D2 AC005559
D19S814/D19S20 GDB:591942 610 F18382 LLNL-F_140D2 AC005577
ELA2 M34379 Ela2 850 R33516 LLNL-R_298A4 AC004799
DF M84526 Adn 870 R32285 LLNL-R_285B9
D19S886 Z52881 1020 R32184 LLNL-R_284B4 AC004528
GPX4 X71973 Gpx4 1130 R28738 LLNL-R_248C2 AC004151
STK11 AF035625 1250 R30295 LLNL-R_264D11
R29144 LLNL-R_252D12 AC004221
CIRBP D78134 Cirbp 1300 R33114 LLNL-R_293G10 AC004258
EFNA2 AJ007292 Efna2 1320 R33114 LLNL-R_293G10 AC004258
D19S883 Z52832 1430 BC38864 CIT978SKB_25B13
PCSK4 AB001898-1914 Pcsk4 1510 BC38864 CIT978SKB_25B13
TCF3 M31523 Tcfe2a 1650 R27377 LLNL-R_234A9 AC005321
No human symbol D10Bwg1364e 1880 BC41487 CIT978SKB_31O20
AP3D AF002163 Ap3d 2120 R26660 LLNL-R_226E12 AC005328
R26634 LLNL-R_226C10 AC005545
F8682 LLNL-F_39C10 AC005257
AMH K03474 Amh 2240 F20489 LLNL-F_162C9 AC005263
OAZ1 U09202 Oaz1 2260 FOS37308 LLNL-FOS_25A4 AC004152
D19S878 Z52750 2350 FOS39554 LLNL-FOS_48D6 AC004410
LMNB2 M94362 Lmnb2 2420 F24881 LLNL-F_208A9
GNG7 AB010414 Gng7 2510 F23259 LLNL-F_191B7 AC005512
D19S565 Z51674 2550 FOS39347 LLNL-FOS_46C3 AC005756
THOP1 U29366 Thop1 2780 BC41195 CIT978SKB_31C16 AC006538
TLE2 M99436 3000 R26610 LLNL-R_226A10 AC007766
AES U04241 Grg 3040 F23613 LLNL-F_194H1 AC005944
D19S591 GDB:365306 3060 F23613 LLNL-F_194H1 AC005944
GNA11 M69013 Gna11 3090 F23990 LLNL-F_198G6 AC005262
GNA15 M63904 Gna15 3130 F23990 LLNL-F_198G6 AC005262
R31335 LLNL-R_275C7 AC005264
D19S120 GDB:127658 3170 R31045 LLNL-R_272C5
D19S424 Z24649 3210 R31341 LLNL-R_275D1 AC005331
D19S209 Z16605 3290 R34115 LLNL-R_304C3
HMG20B AF072836 Hmg20b 3560 R31109 LLNL-R_272H9 AC005786
TBXA2R D38081 Tbxa2r 3580 R31449 LLNL-R_276E1 AC005175
cDNA298622 (Sut1e) N74289,W04390 D10Sut1e 3740 F16403 LLNL-F_119G3 AC005777
MATK L18974 Matk 3760 F16403 LLNL-F_119G3 AC005777
DAPK3 AB007144 Dapk3 3900 BC95216 CIT978SKB_171N13
BC802058 CITB-E1_2622I13
MAP2K2 L11285 Map2k2 4030 BC802058 CITB-E1_2622I13
R33590_1 (bZIP motif) AC005620 D10Bur1e 4120 R33590 LLNL-R_298G6 AC005620
R33243_1 SIRT6 AF233396 Sirt6 4140 R33590 LLNL-R_298G6 AC005620
R33243 LLNL-R_295B7 AC006930
R33243_2 (Ank. motif) AC006930 D10Bur2e 4170 R33243 LLNL-R_295B7 AC006930
F20887 LLNL-F_166D11 AC005578
EBI3 L08187 Ebi3 4200 F20887 LLNL-F_166D11 AC005578
SH3GL1 X99656 Sh3d2b 4330 R31167 LLNL-R_273E7 AC007292
D19S894 Z53052 4360 BC48708 CIT978SKB_50L17
  • Markers/genes are listed in order from p-telomere to centromere. Only those genes and markers shown in Figure 2 are listed. Accession numbers are Genbank unless otherwise indicated. Symbols for mouse orthologs are listed where available. Locations, in approximate kilobase from p-telomere, were determined from a combination of map and sequence data. Sequenced genomic clones containing each gene or marker are indicated. Multiple clones are listed for genes spanning more than one sequenced clone. Genbank accession numbers are given for clones with finished sequence.

This Article

  1. Genome Res. 10: 1369-1380

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