Ecologic Genomics of DNA: Upstream Bending in Prokaryotic Promoters

Table 2.

Sizes of Intergenic Regions

Organism ≤25 ≤125 ≤475 ≤1000 >1000 All
Aeropyrum pernix 0 426 560 201 107 1324
0.0 0.322 0.425 0.153 0.081
Archaeoglobus fulgidus 46 661 318 45 51 1121
0.041 0.590 0.284 0.041 0.045
Aquifex aeolicus 32 289 178 41 11 551
0.058 0.524 0.323 0.075 0.020
Borrelia burgdorferi 33 231 113 9 5 391
0.084 0.591 0.288 0.023 0.013
Bacillussp. 112 1366 1262 133 51 2924
0.038 0.467 0.431 0.046 0.017
Chlamydia pneumonia 29 260 326 27 15 657
0.044 0.395 0.496 0.042 0.023
Chlamydia trachomatis 32 219 266 16 9 542
0.059 0.404 0.491 0.031 0.017
Escherichia coli 86 1222 1281 169 45 2803
0.031 0.436 0.456 0.060 0.016
Haemophilus influenzae 25 620 424 47 61 1177
0.021 0.527 0.361 0.041 0.052
Helicobacter pylori 45 383 316 36 49 829
0.054 0.462 0.382 0.042 0.059
Mycoplasma genitalium 9 85 53 12 15 174
0.052 0.488 0.303 0.071 0.086
Mycoplasma pneumoniae 15 110 147 56 25 353
0.042 0.312 0.415 0.157 0.071
Methanococcus jannaschii 46 530 399 46 55 1076
0.043 0492 0.371 0.045 0.051
Methanobacterium 55 590 401 26 9 1081
 thermoautotrophicum 0.051 0.546 0.370 0.024 0.008
Mycobacterium tuberculosis 92 1203 902 125 77 2399
0.038 0.501 0.377 0.051 0.032
Pyrococcus abyssi 31 499 236 57 29 852
0.036 0.586 0.277 0.066 0.034
Pyrococcus horikoshii 24 432 364 95 97 1012
0.024 0.427 0.360 0.095 0.096
Rickettsia prowazekii 14 202 231 84 167 698
0.020 0.290 0.331 0.121 0.239
SynechocystisPCC6803 62 1204 1205 127 13 2611
0.024 0.461 0.462 0.049 0.005
Thermotoga maritima 34 339 155 24 51 603
0.056 0.562 0.257 0.041 0.085
Treponema pallidum 28 359 177 8 19 591
0.047 0.608 0.300 0.015 0.032
  • The largest values are shown in boldface type.

This Article

  1. Genome Res. 10: 1185-1193

Preprint Server