From Complete Genomes to Measures of Substitution Rate Variability Within and Between Proteins

Table 2.

Gamma Distribution Parameter α Estimated from Multiple Alignments

Protein family Pfam ID α Estimate
Ribulose biphosphate carboxylase, large chain PF00016 0.21
Cytochrome b (N terminal)/b6/petB PF00032 0.22
Hemagglutinin PF00509 0.22
6-Phosphogluconate dehydrogenase PF00393 0.24
Reverse transcriptase PF00078 0.29
Class I histocompatibility antigen, domains α1 and α2 PF00129 0.29
Retroviral Vpr protein PF00522 0.31
NADH-Ubiquinone/plastoquinone oxidoreductase PF00361 0.35
 Average ± standard deviation 0.27 ± 0.05
  • The α values are given only for the largest families that allowed a reliable extrapolation.

This Article

  1. Genome Res. 10: 991-1000

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