The Mosaic Structure of Human Pericentromeric DNA: A Strategy for Characterizing Complex Regions of the Human Genome

Table 3.

Paralogous STR Primers

Primer pair OLIGO Sequence (5′ to 3′) Location TA °C
 1 101b6-1 GAGAAGGTTCTGGTGGCAGATGCTG 7926–7950 65
101B6-2 TTACCCAGAGTTTGCCAACCCAGAC 8309–8285
 2 101B6-3 CGAGTGACAGTTAACTGGCTACAG 13953–13676 65
101B6-4 CCAAATAGCAATCTAGACAAAGCTG 14475–14451
 3 101b6-65 CAGATTGGCTATAGGTCCATGCC 19536–19558 55
101b6-66 GGAGTTAGGATCTAGAGACAGTAG 20149–20126
 4 101B6-5 GTGCACTCATGTGCTGCTGGAGAC 32227–32250 55
101b6-36 CAAGTGAACGGTGTTGTGTATTGGC 33075–33051
 5 101b6-67 TGACCATTCTTACAGTGGTACTCC 35201–35224 55
101b6-68 ATGTCATCCATACTGCTAGCAGCC 35862–35839
 6 101B6-7 CGGGTAGGACATGATATTGTGGC 37778–37756 55
101b6-37 GTGCTGCATCATGATTACTTATCCTG 37233–37258
 7 101B6-74 CTGTATCAATCACTGCTGTGCTCAG 56741–56717 55
101B6-109 GAGCTAAGTGTTTTCATACATGTC 56308–56331
 8 101B6-78 CTAGTATCAGAGATGTGGCAGAAG 57193–57216 55
101B6-79 CAACCAGAATGAGGGGATTTCCTA 57654–57631
 9 101B6-10 TATCAAGCTGGTTCCAGGAACTGG 64911–64934 55
101b6-38 GTACTGAACATGATCCAGTGTGCTG 65590–65566
10 101B6-116 AACTCCTGGTGTTATGAGGGCAAC 66346–66369 55
101B6-118 AAGAAGTAGGCAGATGATGACAGG 66894–66871
11 101B6-11 CACTTGGTACAATCACCAATGCAAAG 70731–70706 65
101b6-39 GGAAGCTGTGAAGAAGCTGGTCTC 70252–70275
12 101B6-14 TGGCTGATCTGTCTGACAACAGTG 85255–85278 60
101b6-41 CAACACCTAGTTGGCCATATAGTCC 86050–86026
13 101B6-81 AGTTTCCTGCCTGGGATGGTTCAC 90575–90552 55
101b6-42 CAAACAGCTTTGGATCCATAGCCAC 90201–90225
14 83192 TCACAGGCTAGTGGACATGGCAGAC 100389–100366 55
83191 CACCCGCAGCACCTGGATGTCAGC 100165–100189
15 101b6-85 CCTTGTGTGACCAGGTGATCTACC 109336–109313 55
101b6-86 ACAGTAGCCATCACTGCACACATG 108700–108723
16 101B6-27 GGTAGATCACCTGGTCACACAAGG 109313–109336 55
101b6-51 CCAAGAAGTTAGATTCTGTCTTTGG 110437–110413
17 101b6-55 GGTGACATGATGCTCTCATCTGGC 115316–115339 55
101b6-56 CCTTTGGTAGGGATCCAGGGATTG 115740–115717
18 101B6-20 TGTAACATTCTCATAGCCATCTGG 124982–124959 55
101b6-44 GAAACTTTTGGTTACCTGAGATTGC 124701–124725
19 101B6-22 CACATGCAGTTAGGTGTGGACTGG 131151–131174 55
101b6-45 ACGTGACAATGCCTGTCCTGACTG 131537–131514
20 101B6-24 CTGCTGTGAAGTGAATGGTGTCTTC 138788–138764 55
101b6-46 CGTGGTAGACAGAGCTTCATTCAAC 138308–138332
21 101B6-29 GGAGATCTGGGATGGAATAGGGTTC 148181–148205 55
101b6-47 GAGAGATCATAGTGGGTTTGTGGAG 148514–148490
22 101B6-31 CGCCAGTCACCTCTAAACCGTATTG 153385–153361 55
101b6-48 GCCTATCTGTGTAATTGACTGGTTAG 152747–152772
23 101B6-32 CAGTATCTTCACATTCTCTCCCTGTCC 155471–155497 55
101b6-49 GAAAGAAGCAAGAGTGCGCTAAAC 155774–155751
24 101B6-34 CACACCTGCGAGGTGGATGGAAGAG 160943–160919 55
101b6-50 GGTAGCACCTACTTTTCAAATAGCG 160514–160538

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  1. Genome Res. 10: 839-852

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