The Mosaic Structure of Human Pericentromeric DNA: A Strategy for Characterizing Complex Regions of the Human Genome

Table 2.

Genomic Segment Sequence Similarity Searches

Paralogous Genomic Sequence
accession map location bp aligned % sim w/indels position in 101B6 position in accession
AL031601 10p11 28279 97.0 ± .1% 29030–57363 201797–230218
" 10p11 21985 97.3 ± .1% 62773–84828 230254–252655
" 10p11 26042 97.3 ± .1% 110154–139591 161707–135464
" 10p11 4907 96.1 ± .3% 140110–145045 134605–129689
" 10p11 13180 96.9 ± .2% 148036–161973 77319–93720
AC002307 16p11 60268 96.9 ± .1% 47856–109695 1–61389
" 16p11 2940 96.9 ± .1% 140119–143065 61582–64521
AC002041 16p11 21528 96.2 ± .1% 140099–161973 123955–146849
" 16p11 9387 96.3 ± .2% 152567–161973 89735–99146
AJ239321 21q11.1 11394 95.0 ± .2% 150277–161973 32583–47845
Z82252 22 4714 95.0 ± .3% 157235–161973 40814–36075
AC006548 22q11 29200 97.5 ± .1% 110153–139533 59792–89142
AP000535 22q11 1805 93.3 ± .6% 91389–93314 17826–19788
" 22q11 5795 94.9 ± .3% 92479–99554 28981–23067
AP000543 22q11 5430 96.1 ± .1% 91830–110155 36955–19791
" 22q11 17002 94.5 ± .3% 139529–145044 20213–14626
AP000544 22q11 36530 97.0 ± .1% 71773–109772 38993–2260
" 22q11 2228 92.2 ± .6% 139529–141827 2284–1
AP000545 22q11 37069 97.1 ± .1% 38918–76099 37247–1
AP000546 22q11 12863 97.4 ± .1% 3299–16187 39984–24657
" 22q11 6078 97.0 ± .2% 16179–22409 23603–17335
" 22q11 14312 97.2 ± .2% 28789–43152 14351–1
U52111 Xq28 9680 95.4 ± .2% 99671–109435 63289–53533
AC005629 ? 6158 95.7 ± .3% 92082–99552 64544–70776
AC006352 ? 14998 96.5 ± .2% 140099–155195 81100–64760
" ? 9391 96.2 ± .2% 152562–161973 114915–105500
AC006359 ? 4074 93.8 ± .4% 139629–143774 31664–27484
" ? 7133 95.4 ± .2% 154823–161973 63949–56793
AC006453 ? 7822 96.5 ± .2% 14554–22404 133259–142417
" ? 9879 96.7 ± .2% 28788–38702 145388–155314
" ? 6152 95.8 ± .3% 92082–99552 55134–61357
  • Denotes unordered clone in htgs phase.

  • All alignments as of December 1999.

This Article

  1. Genome Res. 10: 839-852

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