Comparative Genomic Sequencing Identifies Novel Tissue-Specific Enhancers and Sequence Elements for Methylation-Sensitive Factors Implicated in Igf2/H19 Imprinting

Table 1.

Evolutionarily Conserved Segments Downstream of H19 and the Summary of Transgenesis Experiments

Segment Position Size (bp) Sequence identity (%) No. of embryo Major sites of expression Tissue-specific enhancer activity
with integration with expression
CS1 10344–10571 228 78 15 5 ganglionic placode of cranial nerves +
CS2 11605–12076 472 78 9 5 various
CS3 12846–13089 244 72 9 4 (+1) sclerotome +
CS4 14280–14664 385 68 16 2 (+3) liver, gut +
CS5 18151–18535 385 70 4 3 ectoderm of limb buds, neural tube floor plate +
CS6 21142–21501 360 68 6 5 myotome, rib primordia, intercostal muscles +
CS7 23733–23963 231 74 10 7 mesenchymal condensation of limb buds +
CS8 24834–25111 278 85 11 4 various
CS9 32288–32773 486 71 8 6 myotome, rib primordia, intercostal muscles +
CS10 35463–35748 286 79 9 0
  • Nucleotide position and segment size are given according to the mouse sequence (GenBank accession no. AF049091).

  • Nucleotide sequence identity between the human and mouse sequences is shown.

  • Number of embryos that showed ectopic expression only is indicated in parentheses.

This Article

  1. Genome Res. 10: 664-671

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