Using Database Matches with HMMGene for Automated Gene Detection in Drosophila

Table 2.

The Performance on the std1 Set

No database matches All but EST matches Including all matches Original submission
Base level
 Sensitivity 76.9 95.9 96.8 96.3
Exon level
 Sensitivity 61.8 69.9 69.9 68.3
 Missing exons 19.5 7.3 4.1 5.7
Gene level
 Sensitivity 100% 37.2 39.5 37.2 34.9
 Sensitivity 99% 41.9 44.2 44.2 41.9
 Sensitivity 95% 46.5 48.8 55.8 53.5
 Missing genes 18.6 4.7 4.7 7.0
  • The last column corresponds to the original submission to GASP.

This Article

  1. Genome Res. 10: 523-528

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