Construction of a High-Resolution 2.5-Mb Transcript Map of the Human 6p21.2–6p21.3 Region Immediately Centromeric of the Major Histocompatibility Complex

Table 2.

Sequenced Clones

Clone name Accession no. Type Status Contigs Sequenced
dJ50J22 Z84484 PAC F 1 146746
dJ524E15 Z84485 PAC F 1  80908
dJ179N16 Z95152 PAC F 1 172048
dJ108K11 Z85986 PAC F 1 145616
dJ431A14 Z85996 PAC F 1 195364
dJ422H11 Z99128 PAC F 1 112984
dJ340B19 AL033519 PAC U 53 128168
dJ109F14 AL022721 PAC F 1 170245
dJ329A5 Z97832 PAC U 6 179338
dJ187N21 Z98036 PAC F 1 103146
dJ291J10 Z93017 PAC U 8 134771
cICK721 AL021366 cosmid F 1  40775
HSICB2046 Z97183 cosmid F 1  39872
HSF0811 Z97184 cosmid F 1  40127
Clone name G+C (%) Isochore Repeat (%) Genes Gene density
dJ50J22 47.7 H1/H2 29.5 2 0.14
dJ524E15 44.0 H1 44.5 1 0.12
dJ179N16 42.5 L2/H1 37.8 2 0.12
dJ108K11 43.6 L2/H1 46.6 3 0.21
dJ431A14 50.0 H2 25.9 4 0.20
dJ422H11 41.0 L1/L2 45.5 1 0.09
dJ340B19 44.1 H1 50.6 2 0.16
dJ109F14 50.2 H2 35.9 4 0.23
dJ329A5 48.1 H1/H2 32.7 4 0.22
dJ187N21 41.9 L1/L2 45.7 1 0.10
dJ291J10 49.7 H2 51.2 2 0.15
cICK721 50.1 H2 28.3 4 0.98
HSICB2046 49.9 H2 39.5 4 1.00
HSF0811 52.4 H3 30.6 6 1.50
  • Report of sequenced clones at the Sanger Centre that are part of the physical map of the 6p21.2–6p21.3 boundary region.

  • (F) Finished; (U) unfinished.

  • Number of formed contigs.

  • Produced sequence (bp).

  • Percentage of GC and the corresponding isochore (according to Bernardi 1989).

  • The percentage of repeats was estimated using RepeatMasker.

  • The number of identified genes is used to calculate the gene density, expressed in number of genes per 10 kb.

This Article

  1. Genome Res. 10: 454-472

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