Table 1.
Summary of L1-Associated 3′ Transduction Events
| L1 element (gi no. and coordinates) | L1 structure | Class | TSDs | pA signal | Poly(A) tail (bp) | Transduced segment length (bp) | |||||||
| length (bp) | ORF1 | ORF2 | poly(A) tail (bp) | ||||||||||
| 1279499, 11400 . . 17418 | 6019 | — | — | 25 | 1 | AAGAAAGAGCCAA | ATTAAA | 27 | 479 | ||||
| 1669380, (16606 . . 22620) | 6015 | — | — | 24 | 1 | AGAAATTGTC | ATTAAA | 17 | 89 | ||||
| 2275172, (73720 . . 79740) | 6021 | + | — | 22 | 1 | AGAAATCTGATTTGA | AATAAA | 13 | 975 | ||||
| 2588618, (59187 . . 65202) | 6016 | + | — | 27 | 1 | GAAATTTTTCATC | AATAAA | 12 | 337 | ||||
| 2588627, 131175 . . 137191 | 6017 | — | + | 14 | 1 | AAAAATTTACTGTCTA | AATAAA | 10 | 455 | ||||
| 2809267, (11716 . . 17735) | 6020 | + | + | 47 | 1 | AAAAAAAATCACCA | AATAAA | 15 | 137 | ||||
| 2853183, 4261 . . 10276 | 6016 | + | + | 36 | 1 | AAAGAAACTGAAGAGG | AATAAA | 25 | 175 | ||||
| 3319674, 61629 . . 67639 | 6011 | + | — | 16 | 1 | AAAGAAAAAATG | AATAAA | 17 | 272 | ||||
| 3810569, 21041 . . 27057 | 6017 | + | — | 24 | 1 | AGAAGCA | ATTAAA | 14 | 821 | ||||
| 3845408, (22572 . . 28582) | 6011 | — | — | 17 | 1 | AGAATCTGACCTTCC | AATAAA | 13 | 460 | ||||
| 2076718, 29372 . . 35393 | 6022 | — | — | 18 | 2 | AAGAAAGAGAATA | — | 9 | 356 | ||||
| 3288437, 65129 . . 71148 | 6020 | + | — | 16 | 2 | AAAGAACACCTGGG | — | 11 | 52 | ||||
| 3522964, (24909 . . 30926) | 6018 | + | + | 61 | 2 | AAAAAACACAGTGAA | — | 14 | 119 | ||||
| 4006838, 117572 . . 123596 | 6025 | + | — | 28 | 2 | AGAAGAAATG | — | 22 | 36 | ||||
| 3421083, 114651 . . 120654 | 6004 | — | — | 37 | 3 | AATGTTTA | AATAAA | 28 | 16 | ||||
| 3510243, (4788 . . 10794) | 6007 | — | — | 16 | 3 | AAATAGT[T/C]GAAGA | AATAAA | 21 | 7 | ||||
| 3808075, 6601 . . 12628 | 6028 | + | + | 23 | 3 | AAAAAGGAGCCCGG | AATAAA | 18 | 11 | ||||
| 3873180, 114223 . . 120240 | 6018 | + | — | 26 | 3 | AAGATTTTGTG | AATAAA | 26 | 10 | ||||
| 3928116, 61076 . . 67082 | 6007 | — | — | 18 | 3 | AGAAACTTGGAACACA | AATAAA | 6 | 8 | ||||
| 3953485, 108923 . . 114934 | 6012 | — | — | 31 | 3 | AAGCAATTTGT | — | 17 | 26 | ||||
| 4107187, 91010 . . 97031 | 6022 | — | — | 9 | 3 | AAACAGTATTTTCCCT | AATAAA | 8 | 13 | ||||
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Table 1 is also available athttp://www.bs.jhmi.edu/mbg/boekelab/3'tstable1links.html, where links to the corresponding GenBank records are provided for all gi numbers.
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↵ORF1 and ORF2 are L1 open reading frames; (+) An ORF of predicted size is seen at the predicted location within the L1.
