Table 2.
Average Number of Chromosome Breaks Between Consecutive Markers and the Average of the Logarithm of Two-Point Likelihood for the Maps with Breakage Probabilities Computed as in Extended TSP + MLE
| Chr | OCB/no. of markers | Log [L(M)]/no. markers | |||
| RHMAPPER | CONCORDE | RHMAPPER | CONCORDE | ||
| 1 | ? | 2.91 | ? | −4.41 | |
| 2 | 4.96 | 2.88 | −6.24 | −4.40 | |
| 3 | 5.18 | 3.13 | −6.55 | −4.73 | |
| 4 | 5.52 | 2.96 | −6.77 | −4.59 | |
| 5 | 5.17 | 3.09 | −6.67 | −4.69 | |
| 6 | 4.76 | 3.11 | −6.28 | −4.72 | |
| 7 | 5.91 | 3.69 | −7.16 | −5.29 | |
| 8 | 5.34 | 3.09 | −6.73 | −4.70 | |
| 9 | 4.73 | 3.16 | −6.21 | −4.79 | |
| 10 | 5.35 | 3.47 | −6.73 | −5.08 | |
| 11 | 5.79 | 3.24 | −7.00 | −4.84 | |
| 12 | 5.31 | 3.32 | −6.86 | −5.05 | |
| 13 | 4.58 | 3.17 | −5.96 | −4.79 | |
| 14 | 4.04 | 2.93 | −5.69 | −4.57 | |
| 15 | 4.70 | 3.76 | −6.36 | −5.39 | |
| 16 | 5.04 | 3.49 | −6.47 | −5.12 | |
| 17 | 4.39 | 3.69 | −6.07 | −5.50 | |
| 18 | 6.10 | 3.88 | −7.52 | −5.54 | |
| 19 | 4.95 | 3.23 | −6.59 | −4.88 | |
| 20 | 4.87 | 3.70 | −6.43 | −5.53 | |
| 21 | 3.79 | 3.36 | −5.73 | −5.16 | |
| 22 | 4.21 | 3.41 | −6.24 | −5.20 | |
| X | 4.35 | 2.80 | −5.52 | −4.22 | |
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(Chr) chromosome number; (RHMAPPER) maps computed by us using RHMAPPER for G3 panel data; (CONCORDE) maps computed using CONCORDE for G3 panel data.
