Table 1.
Average Number of Chromosome Breaks Between Consecutive Markers and the Average of the Logarithm of Two-Point Likelihood for the Maps with Breakage Probabilities Computed as in Extended TSP + MLE
| Chr | OCB/no. of markers | Log [L(M)]/no. of markers | ||||
| Whitehead | RHMAPPER | CONCORDE | Whitehead | RHMAPPER | CONCORDE | |
| 1 | 3.70 | ? | 1.66 | −5.74 | ? | −2.28 |
| 2 | 4.18 | 3.80 | 2.12 | −6.37 | −5.47 | −3.02 |
| 3 | 3.92 | 2.71 | 1.97 | −6.17 | −4.22 | −2.82 |
| 4 | 3.84 | 3.75 | 2.15 | −5.97 | −5.37 | −3.01 |
| 5 | 3.66 | 3.37 | 1.99 | −5.72 | −4.98 | −2.73 |
| 6 | 3.59 | 2.60 | 1.70 | −5.73 | −4.07 | −2.44 |
| 7 | 4.00 | 2.86 | 1.92 | −6.20 | −4.41 | −2.79 |
| 8 | 3.64 | 3.64 | 2.09 | −5.88 | −5.39 | −2.97 |
| 9 | 3.56 | 2.86 | 1.85 | −5.59 | −4.28 | −2.55 |
| 10 | 3.76 | 3.55 | 2.04 | −5.95 | −5.24 | −2.91 |
| 11 | 3.35 | 2.53 | 1.86 | −5.26 | −3.87 | −2.42 |
| 12 | 3.67 | 3.87 | 1.98 | −5.86 | −5.66 | −2.81 |
| 13 | 3.58 | 2.92 | 2.01 | −5.72 | −4.50 | −2.89 |
| 14 | 3.43 | 2.43 | 1.79 | −5.52 | −3.78 | −2.53 |
| 15 | 4.28 | 4.16 | 2.25 | −6.64 | −5.99 | −3.19 |
| 16 | 4.43 | 3.18 | 2.32 | −6.70 | −4.87 | −3.30 |
| 17 | 4.27 | 2.74 | 2.03 | −6.71 | −4.29 | −2.83 |
| 18 | 4.22 | 3.07 | 2.47 | −6.48 | −4.76 | −3.63 |
| 19 | 4.40 | 2.78 | 1.99 | −6.74 | −4.26 | −2.67 |
| 20 | 3.76 | 2.41 | 1.74 | −6.10 | −3.83 | −2.45 |
| 21 | 3.99 | 2.64 | 2.19 | −6.65 | −4.40 | −3.35 |
| 22 | 4.12 | 2.87 | 2.17 | −6.62 | −4.53 | −3.09 |
| X | 3.37 | 2.36 | 1.70 | −5.22 | −3.61 | −2.32 |
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(Chr) Chromosome number; (Whitehead) Whitehead Institute map (Hudson et al., 1995); (RHMAPPER) maps computed by us using RHMAPPER for GB4 panel data; (CONCORDE) maps computed using CONCORDE for GB4 panel data.
